Locus 9206

Sequence ID 3R_DroMel_CAF1
Location 24,545,153 – 24,545,243
Length 90
Max. P 0.720730
window14724

overview

Window 4

Location 24,545,153 – 24,545,243
Length 90
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 88.36
Mean single sequence MFE -28.32
Consensus MFE -25.63
Energy contribution -25.22
Covariance contribution -0.41
Combinations/Pair 1.26
Mean z-score -1.42
Structure conservation index 0.91
SVM decision value 0.40
SVM RNA-class probability 0.720730
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24545153 90 - 27905053
GUCGCCGGCGGGACGGUGAACCGAA-----AGCCGAAACCAAAAACCCGAUGCGGUGAACCGCAAAAUUGCGAGUGCGACAACUGUCAGCUGGAA
.((((((((....(((....)))..-----.))))...............(((((....))))).....))))..(((((....))).))..... ( -30.90)
>DroPse_CAF1 51916 90 - 1
GUCAUUGGCAGGACACGGAAGCCGA-----CCUCGAAACCAAAAACCCGACGCGGUGAACCGCAAAAUUGCGAGUGCGACAACUGUCAGCCGGAA
....(((((..(.(((((..((((.-----(.(((............))).)))))...))(((....)))..))))(((....))).))))).. ( -24.10)
>DroSec_CAF1 43403 90 - 1
GUCGCCGGCGGGACGGUGAACCGAA-----AGCAGAAACCAAAAACCCGAUGCGGUGAACCGCAAAAUUGCGAGUGCGACAACUGUCAGCUGGAA
....((((((((.(((....)))..-----....(....).....)))..(((((....))))).....((....))(((....))).))))).. ( -29.50)
>DroSim_CAF1 44903 90 - 1
GUCGCCGGCGGGACGGUGAACCGAA-----AGCCGAAACCAGAAACCCGAUGCGGUGAACCGCAAAAUUGCGAGUGCGACAACUGUCAGCUGGAA
.((((((((....(((....)))..-----.))))...............(((((....))))).....))))..(((((....))).))..... ( -30.90)
>DroYak_CAF1 44422 95 - 1
GUCGCCGGCGGGACGGUGAACUGAAACCAAAGCCGAAACCAAAAACCCGAUGCGGUGAACCGCAAAAUUGCGAGUGCGACAACUGUCAGCUGGAA
.((((((((.((.(((....)))...))...))))...............(((((....))))).....))))..(((((....))).))..... ( -30.40)
>DroPer_CAF1 31308 90 - 1
GUCAUUGGCAGGACACGGAAGCCGA-----CCUCGAAACCAAAAACCCGACGCGGUGAACCGCAAAAUUGCGAGUGCGACAACUGUCAGCCGGAA
....(((((..(.(((((..((((.-----(.(((............))).)))))...))(((....)))..))))(((....))).))))).. ( -24.10)
>consensus
GUCGCCGGCGGGACGGUGAACCGAA_____AGCCGAAACCAAAAACCCGAUGCGGUGAACCGCAAAAUUGCGAGUGCGACAACUGUCAGCUGGAA
....((((((((.(((....)))...........(....).....)))(((((((....))))....((((....)))).....))).))))).. (-25.63 = -25.22 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:54 2006