Locus 9203

Sequence ID	3R_DroMel_CAF1
Location	24,542,679 – 24,542,769
Length	90
Max. P	0.998460

overview

Window 9

Location	24,542,679 – 24,542,769
Length	90
Sequences	5
Columns	90
Reading direction	forward
Mean pairwise identity	96.22
Mean single sequence MFE	-24.44
Consensus MFE	-19.36
Energy contribution	-20.60
Covariance contribution	1.24
Combinations/Pair	1.04
Mean z-score	-1.69
Structure conservation index	0.79
SVM decision value	-0.01
SVM RNA-class probability	0.528406
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24542679 90 + 27905053
UUGAACUCGAUGACAUUAAACUGCCGACUGGCAGAUGUUCGAUUCCUAAGAUGACGGCCCAUUGUGGCCAUGUCUCAUCACUUUCCAUUC
..(((.((((..((((....(((((....))))))))))))))))....(((((.((((......)))).....)))))........... ( -23.10)
>DroSec_CAF1 40946 90 + 1
UUGAACUCGAUGACAUUAAACUGCCGACUGGCAGAUGUUCGAGUCCUAAGAUGACGGCCCAUUGUGGCCAUGUCUCAUCACUUUCCAUUC
..(.((((((..((((....(((((....))))))))))))))).)...(((((.((((......)))).....)))))........... ( -26.10)
>DroSim_CAF1 42267 90 + 1
UUGAACUCGAUGACAUUAAACUGCCGACUGGCAGAUGUUCGAGUCCUAAGAUGACGGCCCAUUGUGGCCAUGUCUCAUCACUUUCCAUUC
..(.((((((..((((....(((((....))))))))))))))).)...(((((.((((......)))).....)))))........... ( -26.10)
>DroEre_CAF1 45274 90 + 1
UUGAACUCGAUGACAUUAAACAGCCGACUGGCAGGUGUUCGAGUGCUAAGAUGACGGCCCAUUGUAACGAUGUCUCAUCACUUUCCAUUC
....((((((..(((((...(((....)))...))))))))))).....(((((.(((..((((...))))))))))))........... ( -19.50)
>DroYak_CAF1 41935 90 + 1
UUGAACUCGAUGACAUUAAACUGCCGACUGGCAGAUGUUCGAGUCCUAAGAUGACGUCCCAUUGUGGCGAUGUCUCAUCACUUUCCAUUC
.(((((((((..((((....(((((....))))))))))))))).....((.((((((((.....)).)))))))).))).......... ( -27.40)
>consensus
UUGAACUCGAUGACAUUAAACUGCCGACUGGCAGAUGUUCGAGUCCUAAGAUGACGGCCCAUUGUGGCCAUGUCUCAUCACUUUCCAUUC
..(.((((((..((((....(((((....))))))))))))))).)...(((((.((((......)))).....)))))........... (-19.36 = -20.60 +   1.24)

alignment

secondary structure

dotplot

Window 0

Location	24,542,679 – 24,542,769
Length	90
Sequences	5
Columns	90
Reading direction	reverse
Mean pairwise identity	96.22
Mean single sequence MFE	-28.08
Consensus MFE	-25.98
Energy contribution	-27.06
Covariance contribution	1.08
Combinations/Pair	1.07
Mean z-score	-2.11
Structure conservation index	0.93
SVM decision value	3.11
SVM RNA-class probability	0.998460
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24542679 90 - 27905053
GAAUGGAAAGUGAUGAGACAUGGCCACAAUGGGCCGUCAUCUUAGGAAUCGAACAUCUGCCAGUCGGCAGUUUAAUGUCAUCGAGUUCAA
.....(((..(((((((((..((((......)))))))..................(((((....))))).......))))))..))).. ( -27.20)
>DroSec_CAF1 40946 90 - 1
GAAUGGAAAGUGAUGAGACAUGGCCACAAUGGGCCGUCAUCUUAGGACUCGAACAUCUGCCAGUCGGCAGUUUAAUGUCAUCGAGUUCAA
.............(((((.((((((......))))))..)))))(((((((((((((((((....)))))....))))..)))))))).. ( -33.00)
>DroSim_CAF1 42267 90 - 1
GAAUGGAAAGUGAUGAGACAUGGCCACAAUGGGCCGUCAUCUUAGGACUCGAACAUCUGCCAGUCGGCAGUUUAAUGUCAUCGAGUUCAA
.............(((((.((((((......))))))..)))))(((((((((((((((((....)))))....))))..)))))))).. ( -33.00)
>DroEre_CAF1 45274 90 - 1
GAAUGGAAAGUGAUGAGACAUCGUUACAAUGGGCCGUCAUCUUAGCACUCGAACACCUGCCAGUCGGCUGUUUAAUGUCAUCGAGUUCAA
.....(((..((((((.(....((((..((((....))))..))))....(((((...(((....))))))))..).))))))..))).. ( -19.90)
>DroYak_CAF1 41935 90 - 1
GAAUGGAAAGUGAUGAGACAUCGCCACAAUGGGACGUCAUCUUAGGACUCGAACAUCUGCCAGUCGGCAGUUUAAUGUCAUCGAGUUCAA
................(((.((.((.....)))).)))......(((((((((((((((((....)))))....))))..)))))))).. ( -27.30)
>consensus
GAAUGGAAAGUGAUGAGACAUGGCCACAAUGGGCCGUCAUCUUAGGACUCGAACAUCUGCCAGUCGGCAGUUUAAUGUCAUCGAGUUCAA
.............(((((.((((((......))))))..)))))(((((((((((((((((....)))))....))))..)))))))).. (-25.98 = -27.06 +   1.08)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:51 2006