Locus 9201

Sequence ID 3R_DroMel_CAF1
Location 24,533,852 – 24,533,947
Length 95
Max. P 0.608711
window14716

overview

Window 6

Location 24,533,852 – 24,533,947
Length 95
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 85.90
Mean single sequence MFE -34.68
Consensus MFE -27.98
Energy contribution -28.48
Covariance contribution 0.50
Combinations/Pair 1.17
Mean z-score -1.86
Structure conservation index 0.81
SVM decision value 0.15
SVM RNA-class probability 0.608711
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24533852 95 - 27905053
ACCCGGCCAA-AGGGCUAUUGUUAUCAAAGUUGCUUUGCCUUUGGCCCCGGAAUGGCCUGGGAUAGCCAGCUCCGGGGAGGAUCUUCCCGUUUUCC-
....((((((-(((((....))...(((((...))))))))))))))(((((.((((........))))..)))))(((((((......)))))))- ( -36.30)
>DroSec_CAF1 32178 93 - 1
ACCCGGCCAA-AGGGCUAUUGUUAUCAAAGUUGCUUUGCCUUUGGUCCCGGAAUGGCCUGGGAUGGCCAGCUCCAGGGAGGUUCUUCCCGU--CCC-
....((((((-(((((....))...(((((...))))))))))))))..(((.(((((......)))))..))).(((((....)))))..--...- ( -35.60)
>DroSim_CAF1 33432 93 - 1
ACCCGGCCAA-AGGGCUAUUGUUAUCAAAGUUGCUUUGCCUUUGGCCCCGGAAUGGCCUGGGCUGGCCAGCUCCAGGGAGGAUCUUCCCGU--CCC-
.(((((((((-(((((....))...(((((...))))))))))))))..(((.(((((......)))))..))).))).((((......))--)).- ( -39.60)
>DroEre_CAF1 36416 96 - 1
ACCCGGCCAA-AGGGCUAUUGUUAUCAAAGUUGCUUUGCCUUUGGCCCCGGAAUGGCCUGGUAUGGUCAGCUCCAGGGAGGAUCUUCCCGUUUUCCA
.(((((((((-(((((....))...(((((...))))))))))))))..(((.(((((......)))))..))).))).(((...........))). ( -36.20)
>DroYak_CAF1 32790 96 - 1
ACCCGGCCAA-AGGGCUAUUGUUAUCAAAGUUGCUUUGCCUUUGGCCCCGGAAUGGCCUGGGUUGGCCAGCUUCAGGGAGGAUCUUCCCGUUUACCA
....((((((-(((((....))...(((((...))))))))))))))..((..(((((......)))))......(((((....))))).....)). ( -35.60)
>DroAna_CAF1 32598 77 - 1
ACCCUGCCAAAAGGGCUAUUGUUAUCAAAGUUGCUUUGCCUUUGGCCC------GGCUUGGCCUGGCCUGCUCUGGGGAAGAU--------------
.(((.((...((((((....((..........))...))))))((((.------(((...))).)))).))...)))......-------------- ( -24.80)
>consensus
ACCCGGCCAA_AGGGCUAUUGUUAUCAAAGUUGCUUUGCCUUUGGCCCCGGAAUGGCCUGGGAUGGCCAGCUCCAGGGAGGAUCUUCCCGU__CCC_
.(((((((((..((((....((..........))...))))))))))..(((.(((((......)))))..))).)))................... (-27.98 = -28.48 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:48 2006