Locus 9199

Sequence ID 3R_DroMel_CAF1
Location 24,532,732 – 24,532,827
Length 95
Max. P 0.896307
window14714

overview

Window 4

Location 24,532,732 – 24,532,827
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 75.78
Mean single sequence MFE -16.52
Consensus MFE -10.22
Energy contribution -10.30
Covariance contribution 0.08
Combinations/Pair 1.31
Mean z-score -1.73
Structure conservation index 0.62
SVM decision value 0.99
SVM RNA-class probability 0.896307
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24532732 95 + 27905053
UCAUAGUACGCCCACUUGCACUCCUUUCCUCCACCUUUCACUACUCCUU--UUUCUCCCCUGCGUUUGCAUAACGCAUACGCCACGUUGUGCGACUA
.....((((((......))..............................--..........((((.(((.....))).))))......))))..... ( -14.20)
>DroPse_CAF1 38358 95 + 1
UCAGAGUCCGCCCUUUACUGCUUUAUCUCUCUGUCUUUUUCCUCUGGCUUGUGCCCGCACAGUAUAUGCAUAACGCAUACGCCACGUUGCACGAU--
.(((((...((........)).......)))))...........(((((((((....)))))..(((((.....))))).))))((.....))..-- ( -18.40)
>DroSec_CAF1 31059 95 + 1
UCAUAGCACGCCCACUUGCACUCCUUCCCUCCACCUUUCACUACUCCUU--UUCCUGCCCUGCGUUUGCAUAACGCAUACGCCACGUUGUGCGGCUA
...((((.((((.((..(((.............................--....)))...((((.(((.....))).))))...)).).))))))) ( -16.81)
>DroSim_CAF1 32314 95 + 1
UCAUAGCACGCCCACUUGCACUCCUUCCCUCCACCUUUCACUACUCCUU--UUUCUGCCCUGCGUUUGCAUAACGCAUACGCCACGUUGUGCGGCUA
...((((.((((.((..(((.............................--....)))...((((.(((.....))).))))...)).).))))))) ( -16.81)
>DroEre_CAF1 35258 94 + 1
UCAUAGCACGCCCACUUGCACUCCUUCCUUCCUC-UUUCACUACUUCAU--UUUCUUCCCUGCGUUUGCAUAACGCAUACGCCACGUUGUGCGACUA
.....((((((......))...............-..............--..........((((.(((.....))).))))......))))..... ( -16.20)
>DroPer_CAF1 17858 95 + 1
UCAGAGUCCGCCCUUUACUGCUUUAUCUCUCUGUCUUUUUCCUCUGGCUUGUGCCCCCACAGUAUAUGCAUAACGCAUACGCCACGUUGCACGAU--
.(((((...((........)).......)))))...........(((((((((....)))))..(((((.....))))).))))((.....))..-- ( -16.70)
>consensus
UCAUAGCACGCCCACUUGCACUCCUUCCCUCCACCUUUCACUACUCCUU__UUCCUGCCCUGCGUUUGCAUAACGCAUACGCCACGUUGUGCGACUA
.....((((((......))..........................................((((.(((.....))).))))......))))..... (-10.22 = -10.30 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:46 2006