Locus 9197

Sequence ID 3R_DroMel_CAF1
Location 24,526,109 – 24,526,205
Length 96
Max. P 0.589701
window14711

overview

Window 1

Location 24,526,109 – 24,526,205
Length 96
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 70.51
Mean single sequence MFE -41.63
Consensus MFE -16.56
Energy contribution -16.73
Covariance contribution 0.17
Combinations/Pair 1.36
Mean z-score -1.77
Structure conservation index 0.40
SVM decision value 0.11
SVM RNA-class probability 0.589701
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24526109 96 - 27905053
CUGCUGCUGUUG---------CUGCUUC------UUGC------CGGCCAAGGACUCGGAAUCCUCGUGGCUAUCGCCGGGGUAGCCGCGUAUAAGCUGUGGCAGCAGGAGGCGCAG
((((.((....)---------).(((((------((((------..((((((((.......))))((((((((((.....)))))))))).........)))).))))))))))))) ( -44.90)
>DroVir_CAF1 14301 102 - 1
CAGUUGUUGUUG---------CUGCUGU------UGUCCGGCAUCCACCACGGAGUCGCCAUCAUCCUGGUAAUCCGACGAGUAGCCGCGUAUAAGCUGCGGCAACAGCAGACGCAG
.......(((..---------(((((((------((((((((........((((...((((......))))..))))(((........)))....)))).)))))))))))..))). ( -38.90)
>DroPse_CAF1 30854 102 - 1
CUGGUGUUGUUG---------CUGCUUCUGCUGCUGCC------CGACCAGGGACUCGGCAUCGUCAUGAUUAUCCGCAGAAUAGCCGCGUAUUAGCUGCGGCAGCAGCAGACGCAA
...(((((..((---------((((((((((.((((((------(.....)))...))))(((.....))).....)))))...(((((((....)).))))))))))))))))).. ( -41.10)
>DroMoj_CAF1 32689 111 - 1
GUGUUGUUGUUGUUGCCGCUGCUGCUGC------GGUCCAGCAGCCGCCAAGGAGUCGCCAUCGUCCGGGCAAUCAGCAGCGUAGCCGCGUAUCAGCUGCGGCAACAGCAGACGCAG
(((((..(((((((((((((((((((((------......))))).(((..(((..((....))))).)))....))))))(((((.........)))))))))))))))))))).. ( -53.80)
>DroAna_CAF1 25263 102 - 1
CUGCUGCUUUUGUUU------CUGCUUC---UGCUGAC------CGGCCAAGGACUCUGCAUACUCCUGGUCAUCAACGUGGGAGCCUCGUAUUAGCAGCGGCAAAAGAAGACGGAG
(((((.(((((((..------(((((..---((((((.------.(((((.(((..........)))))))).)))..(.((...)).))))..)))))..))))))).)).))).. ( -32.40)
>DroPer_CAF1 10346 102 - 1
CUGGUGUUGUUG---------CUGUUUCUGCUGCUGCC------CGACCAGGGACUCGGCAUCGUCAUGAUUAUCCGCAGAAUAGCCGCGUAUUAGCUGCGGCAACAGCAGACGCAA
...(((((..((---------((((((((((.((((((------(.....)))...))))(((.....))).....)))))...(((((((....)).))))))))))))))))).. ( -38.70)
>consensus
CUGCUGUUGUUG_________CUGCUUC______UGCC______CGACCAAGGACUCGGCAUCGUCCUGGUUAUCCGCAGAGUAGCCGCGUAUUAGCUGCGGCAACAGCAGACGCAG
...((((((((..................................(((((.((...........)).)))))............(((((((....)).)))))))))))))...... (-16.56 = -16.73 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:43 2006