Locus 9196

Sequence ID 3R_DroMel_CAF1
Location 24,525,910 – 24,526,006
Length 96
Max. P 0.707114
window14710

overview

Window 0

Location 24,525,910 – 24,526,006
Length 96
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 78.42
Mean single sequence MFE -24.84
Consensus MFE -15.48
Energy contribution -16.12
Covariance contribution 0.64
Combinations/Pair 1.07
Mean z-score -1.57
Structure conservation index 0.62
SVM decision value 0.37
SVM RNA-class probability 0.707114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24525910 96 + 27905053
UAUCAGAUGCUCGCGUAUU-------GCUUAUUGAGCUAAUUGGAAUUGCCAGCACACGCUGCGCAAA-----AAGUUUGAAGAGCGUUUUUAAUUUGUAUCAACAGC-----
.....(((((........(-------((((.(..((((........((((((((....)))).)))).-----.))))..).)))))..........)))))......----- ( -22.57)
>DroPse_CAF1 30632 99 + 1
UAUCUGUUUC------AGU-------G-UCUUUGAGCAAAUUGGAAUUGCCAACGCAUGCUGCGCAAAAAGAAAAGUUUGAAGAGCAUUUUUAAUUUGUAGCAGCAGCGGCAG
........((------((.-------.-...))))((...((((.....))))(((.(((((((((((..(((((((((...)))).)))))..))))).))))))))))).. ( -26.50)
>DroEre_CAF1 24702 96 + 1
UACCAGAAGCUCGCUUAUU-------GCUUAUUGAGCAAAUUGGAAUUGCCAGCACACGCUGCGCAAA-----AAGUUUGAAGAGCGUUUUUAAUUUGUAUCAACAGC-----
........(((((((((..-------......)))))...(..((.((((((((....)))).)))).-----...))..).))))......................----- ( -23.00)
>DroYak_CAF1 24735 103 + 1
UAUCAGAAGCUCGCUUAUUGCUUAUUGCUUAUUGAGCAAAUUGGAAUUGCCAGCACACGCUGCGCAAA-----AACUUUGCAGAGCGUUUUUAAUUUGUAUCAAGAGC-----
........((((((.....))..........(((((((((((((((.(((((((....)))).((((.-----....))))...))).))))))))))).))))))))----- ( -28.40)
>DroAna_CAF1 25061 89 + 1
UAUCUGGAACU-------U-------GCUUAUUGAGCAAAUUGGAAUUGCCAGCGUACGCUGCGCAAA-----AAGUUUGAAGAACGUUUUUAAUUUGUAUCAACAGC-----
...........-------.-------(((..(((((((((((((((((((((((....)))).)))).-----..((((...))))..))))))))))).)))).)))----- ( -22.10)
>DroPer_CAF1 10124 99 + 1
UAUCUGUUUC------AGU-------G-UCUUUGAGCAAAUUGGAAUUGCCAACGCAUGCUGCGCAAAAAGAAAAGUUUGAAGAGCAUUUUUAAUUUGUAGCAGCAGCGGCAG
........((------((.-------.-...))))((...((((.....))))(((.(((((((((((..(((((((((...)))).)))))..))))).))))))))))).. ( -26.50)
>consensus
UAUCAGAAGCU_____AUU_______GCUUAUUGAGCAAAUUGGAAUUGCCAGCACACGCUGCGCAAA_____AAGUUUGAAGAGCGUUUUUAAUUUGUAUCAACAGC_____
...............................(((((((((((((((((((((((....)))).))))........((((...))))..))))))))))).))))......... (-15.48 = -16.12 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:42 2006