| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,522,670 – 24,522,777 |
| Length | 107 |
| Max. P | 0.567043 |
| Location | 24,522,670 – 24,522,777 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 82.60 |
| Mean single sequence MFE | -17.27 |
| Consensus MFE | -12.86 |
| Energy contribution | -12.14 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24522670 107 + 27905053 AAAGCUAA-AA-UAACAAUCUUAAAAAAGAAAAACUUUCUGCACAGAUCCCUGAGGAUUUGCCUAAACCUUUUCUCCUACUAUGCUCCACAAAUAAAGGAGAAACACAU ...((..(-((-......((((....)))).....)))..)).(((((((....))))))).........((((((((..(((.........))).))))))))..... ( -17.30) >DroSec_CAF1 21100 107 + 1 AAAGCUAA-AA-GAACAAUCUAAUGAAAGAACAACUUUCUGAACAGAUCCCUGAGGAUUUGCCUGAAUCUUUUCUCCUACUAUGCUCCACAAAUAAAGGAGAAACACAU .......(-((-((..........(((((.....)))))....(((((((....)))))))......)))))((((((..(((.........))).))))))....... ( -18.80) >DroSim_CAF1 23097 108 + 1 AGAGCUAAAAA-GAACAAUCUAAUGAAAGAAUAACUUUCUGCACAGAUCCCUGAGGAUUUGCCUGAAUCUUUUCUCCUACUAUGCUCCACAAAUAAAGGAGAAACACAU (((((.....(-((....)))...(((((.....))))).)).(((((((....)))))))......)))((((((((..(((.........))).))))))))..... ( -19.80) >DroEre_CAF1 21455 107 + 1 UAAACUAA-AA-CAAUAAACUUAUAAAAGGAUAACUUUCUGCACAGGUCCUUGAGGAUUUGCCUGAACUUGUUCUCUUACUAUGCUCCACAAAUAAAGGAGAAACACAU ........-..-...........(((.(((((((.(((..(((..(((((....))))))))..))).))))))).))).....((((.........))))........ ( -17.30) >DroYak_CAF1 21491 107 + 1 AAAACCAA-AA-GAAUAAACUUGUAAAAGGGUAAUUUUCUGCACAGAUCCCUGAGGAUUUGCCUGAACCUGUUUUCUUACUAUGCACCACAAAUAAAGGAGAAACACAU ....((..-((-(((..(((..((...((((((......))).(((((((....))))))))))..))..))))))))....((.....))......)).......... ( -15.30) >DroAna_CAF1 21887 102 + 1 AC----AA-AUUUAGC-AACUUCUUAACGUACU-UCUUCUCCAUAGAUCCCUGCGGAUUUGCCUAAAUCUGUUUUCCUACUACGCCCCACAAAUAAAGGAGAAGCACAU ..----..-.......-................-.(((((((..((....))((((((((....)))))))).........................)))))))..... ( -15.10) >consensus AAAGCUAA_AA_GAACAAACUUAUAAAAGAAUAACUUUCUGCACAGAUCCCUGAGGAUUUGCCUGAACCUGUUCUCCUACUAUGCUCCACAAAUAAAGGAGAAACACAU ...........................................(((((((....)))))))..........(((((((..................)))))))...... (-12.86 = -12.14 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:40 2006