Locus 9193

Sequence ID 3R_DroMel_CAF1
Location 24,522,376 – 24,522,485
Length 109
Max. P 0.631868
window14706

overview

Window 6

Location 24,522,376 – 24,522,485
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.66
Mean single sequence MFE -38.92
Consensus MFE -21.58
Energy contribution -22.08
Covariance contribution 0.50
Combinations/Pair 1.26
Mean z-score -1.66
Structure conservation index 0.55
SVM decision value 0.20
SVM RNA-class probability 0.631868
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24522376 109 - 27905053
CGCAGUGGGCGGCAUAGUUGAUGUGGCCCGCCAGCGAGGGCGACAUGAUGCACUCGGCAAUCUGCUGAAAGCAGGUGAUCUUCUGCUUUUGGCUGUGGGGGG---------UUCGAAA--
(((.((((((.((((.....)))).))))))..))).........(((.((.(((.(((....((..((((((((......))))))))..))))).))).)---------))))...-- ( -44.40)
>DroVir_CAF1 9349 119 - 1
CACAGUGUGCGGCAUAAUUGAUGUGACCGGCCAAAGCUGCUGACAUGAUGCACUCGGCAAUCUGCUGGAAGCAUGCAAUCUUUUGCUUUUGGCUAAAAA-GAGUUUACCAUAUUGUGGAG
(((((((((.(((((.....((((.(.((((....)))).).)))).))))((((........((..((((((..........))))))..))......-))))...))))))))))... ( -37.74)
>DroPse_CAF1 27204 112 - 1
CGCAGUGGGCGGAGUAGUUGAUGUGCCCCGCCAGUGCAGGUGACAUGAUGCACUCUGCUAUCUGCUGGAAGCAGGUGAUCUUCUGCUUUUGGCUGUGAA-AA-------GAUUUGGAAGA
.((((..(((((.(((.......))).)))))(((((((....)....))))))))))..((.((..((((((((......))))))))..))...)).-..-------........... ( -42.00)
>DroGri_CAF1 22966 118 - 1
CACAGUGCGCCGCAUAAUUGAUGUGAGCGGCCAGCGCCGGUGACAUGAUGCACUCGGCAAUUUGCUGGAAGCAGGCAAUCUUUUGCUUUUGGCUGUGAG--AUGAGACAAAAUUGUAAGG
(((((((((((((((.....))))).))..((((((((((((.(.....)))).)))).....)))))..))((((((....))))))...))))))..--................... ( -38.90)
>DroAna_CAF1 21592 108 - 1
CACAGUGGGCCGAAUAGUUGAUGUGACCCGCAAGUGAAGGGGACAUUAUGCAUUCUGCAAUCUGCUGAAAGCAGGCAAUCUUUUGCUUUUGGCUGCAAA-AA---------AUGUAAA--
(((.(((((.((.((.....)).)).)))))..)))..(....)....((((((.((((....((..((((((((......))))))))..))))))..-.)---------)))))..-- ( -30.40)
>DroPer_CAF1 6697 112 - 1
CGCAGUGGGCGGAAUAGUUGAUGUGCCCCGCCAGUGCAGGUGACAUGAUGCACUCUGCUAUCUGCUGGAAGCAGGUGAUCUUCUGCUUUUGGCUGUGAA-AA-------GAUUUGGAAGA
.((((..(((((.(((.....)))...)))))(((((((....)....))))))))))..((.((..((((((((......))))))))..))...)).-..-------........... ( -40.10)
>consensus
CACAGUGGGCGGAAUAGUUGAUGUGACCCGCCAGUGCAGGUGACAUGAUGCACUCGGCAAUCUGCUGGAAGCAGGCAAUCUUCUGCUUUUGGCUGUGAA_AA________AAUUGAAAG_
.....((.((((.(((.....)))...))))))..(((((((.(.....)))).)))).....((..((((((((......))))))))..))........................... (-21.58 = -22.08 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:39 2006