Locus 9192

Sequence ID 3R_DroMel_CAF1
Location 24,518,541 – 24,518,661
Length 120
Max. P 0.510915
window14705

overview

Window 5

Location 24,518,541 – 24,518,661
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.72
Mean single sequence MFE -44.73
Consensus MFE -34.24
Energy contribution -33.88
Covariance contribution -0.36
Combinations/Pair 1.32
Mean z-score -1.93
Structure conservation index 0.77
SVM decision value -0.04
SVM RNA-class probability 0.510915
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24518541 120 - 27905053
GGCUUUGGAUGCGGGACAGCUUGAGGAAUACCUCCUCCAGGCUGAUGCACUUGUAGAUGGAGAGCAGGACGCUGGGUGACUCCUCGGCCAGCAGGUGACCCGACCGCAUCAGACCGAUCU
((.((((.((((((..(((((((((((.....)))).))))))).(((.(((.......))).)))((..(((((.(((....))).))))).(....)))..))))))))))))..... ( -49.00)
>DroVir_CAF1 4796 120 - 1
GGCUCUGGAUGCGCGACAGCUUGAGAAAGACCUCCUCGAGGUUAAUGCACUUGUACAUGGACAGCAGCACACUGGGCGAUUCCUCGGCCAGCAAGUGGCCAGAACGCAUUAGACCAAUCU
((.((((.(((((.....((........((((((...))))))....((((((....((..(....)..))((((.(((....))).)))))))))))).....)))))))))))..... ( -35.20)
>DroGri_CAF1 18853 120 - 1
CGCUCUGAAUGCGCGAGAGCUUCAGGAAGACAUCCUCCAGGCUGAUGCACUUAUACAUGGAGAGCAGCAUACUGGGCGAUUCCUCGGCCAGUAAAUGGCCAGAGCGCAUCAGGCCAAUCU
.((.((((.((((((((.(..((((((.....))))((((..((.(((.(((.......))).))).))..))))..))..))))(((((.....)))))...)))))))))))...... ( -45.80)
>DroWil_CAF1 20166 120 - 1
GGCUCUGAAUGCGUGAGAGCUUGAGGAACACCUCCUCGAGACUAAUGCACUUGUACAUGGUUAACAAAACGCUGGGCGACUCCUCGGCCAGCAAGUGUCCUGAGCGCAUCAGACCAAUCU
((.(((((.(((((.((((((((((((.....)))))))).))...((((((.......(((.....)))(((((.(((....))).))))))))))).))..))))))))))))..... ( -48.50)
>DroMoj_CAF1 23354 120 - 1
GGCUCUGGAUGCGGGACAGCUUGAGGAACACCUCCUCCAGGCUAAUGCACUUGUACAUGGUCAGCAGUACGCUGGGCGAUUCCUCGGCCAACAAAUGUCCAGAUCGCAUCAGACCAAUCU
((.((((.(((((((((((((((((((.....)))).)))))).........((((.((.....))))))(.(((.(((....))).))).)....))))....)))))))))))..... ( -42.20)
>DroAna_CAF1 17848 120 - 1
GGCUCUGGAUGCGGGAGAGCUUGAGGAAGACCUCCUCCAGGCUGAUGCAUUUGUACAUGGAGAGCAGGACGCUGGGGGAUUCCUCGGCCAACAAAUGGCCAGAUCGCAUAAGACCAAUCU
((.(((..((((((........((((((..(((((((((.((..........))...)))))(((.....)))))))..))))))(((((.....)))))...)))))).)))))..... ( -47.70)
>consensus
GGCUCUGGAUGCGGGACAGCUUGAGGAAGACCUCCUCCAGGCUAAUGCACUUGUACAUGGAGAGCAGCACGCUGGGCGAUUCCUCGGCCAGCAAAUGGCCAGAGCGCAUCAGACCAAUCU
((.((((.((((((...((((((((((.....))))).)))))....(((((((...((.....))......(((.(((....))).))))))))))......))))))))))))..... (-34.24 = -33.88 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:38 2006