Locus 9190

Sequence ID 3R_DroMel_CAF1
Location 24,510,128 – 24,510,226
Length 98
Max. P 0.741925
window14700

overview

Window 0

Location 24,510,128 – 24,510,226
Length 98
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 84.34
Mean single sequence MFE -30.50
Consensus MFE -20.34
Energy contribution -21.79
Covariance contribution 1.45
Combinations/Pair 1.08
Mean z-score -3.17
Structure conservation index 0.67
SVM decision value 0.45
SVM RNA-class probability 0.741925
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24510128 98 - 27905053
GAGUUCAGCAGGGGUCACGUGAACCCCAACAAAUGUUGGGUUUGUCAUGGAAUAUUUUUC-ACCCC-UUCUGAAUUUAUAAUUCAGACCACAAGUCUGAA
((((((((.((((((..(((((..((((((....))))))....)))))(((.....)))-)))))-).))))))))....(((((((.....))))))) ( -41.70)
>DroPse_CAF1 10014 87 - 1
GCAUUCCAAUUGGGUCGCGUGAACCCCAACAAAUGUUGUGCCUGUCAUGAAAUGUU--CC-A-------CUGAAAAUUUAAU---GUCCACGAGUUUGAA
((..(((....)))..))...........(((((.(((((...(.(((.((((.((--(.-.-------..))).)))).))---).))))))))))).. ( -14.20)
>DroSec_CAF1 8780 95 - 1
GAGUUCAGCAGGGGUCACGUGAACCCCAACAAAUGUUGGGCUUGUCAUGGAAUAAUUUUC-ACCCC-UUCUGAAUUUAUAAU---GUCCACAAGUAUGAA
((((((((.((((((..(((((..((((((....))))))....)))))(((.....)))-)))))-).)))))))).....---............... ( -34.40)
>DroSim_CAF1 8828 95 - 1
GAGUUCAGCAGGGGUCACGUGAACCCCAACAAAUGUUGGGCUUGUCAUGGAAUAAUUUUC-ACCCC-UUCUGAAUUUAUAAU---GUCCACAAGUAUGAA
((((((((.((((((..(((((..((((((....))))))....)))))(((.....)))-)))))-).)))))))).....---............... ( -34.40)
>DroEre_CAF1 8733 95 - 1
GAGUUCAGCAGGGGUCACGUGAACCCCGACAAGUGUUGGGCUUGCCAUGGAAUAUUUUUC-ACCCC-UUUUGAAUUUAUAAU---GUCCACGAGGCUGAA
((((((((.((((((..((((...((((((....)))))).....))))(((.....)))-)))))-).)))))))).....---(((.....))).... ( -29.50)
>DroYak_CAF1 8846 97 - 1
GAGUUCAGCAGGGGUCACGUGAACCCCGACAAAUGUUGGGCUUGCCAUGGAAUAUUUUUCCACCCCUUUUUGAAUUUAUAAU---GUCCACGAGUCGAAA
((((((((.((((((...(..(..((((((....)))))).)..)...((((.....))))))))))..)))))))).....---............... ( -28.80)
>consensus
GAGUUCAGCAGGGGUCACGUGAACCCCAACAAAUGUUGGGCUUGUCAUGGAAUAUUUUUC_ACCCC_UUCUGAAUUUAUAAU___GUCCACAAGUCUGAA
((((((((..(((((..(((((..((((((....))))))....)))))............)))))...))))))))....................... (-20.34 = -21.79 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:34 2006