Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,109,485 – 3,109,604 |
Length | 119 |
Max. P | 0.927432 |
Location | 3,109,485 – 3,109,604 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -23.84 |
Consensus MFE | -22.61 |
Energy contribution | -22.83 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.08 |
Mean z-score | -1.98 |
Structure conservation index | 0.95 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927432 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3109485 119 + 27905053 CAUUUUGAACCCCCCCCCCCCCCGUUCGCAAAACACAAUCAUUU-UUUUGCAGUCAUUUCCCCACCGCUUUGGUGGUGUUGCUAUUGCUGUUGCAUUUGCAUCUGUGUUUUCGCUUUUAG ......((((.............))))((((((((((.......-....(((((.((.....((((((....)))))).....)).)))))(((....)))..)))))))).))...... ( -27.22) >DroSim_CAF1 2399 112 + 1 CAUUUUGA--------CCCCCCCGUUCGCAAAACACAAUCAUUUUUUUUGCAGUCAUUUCCCCACCGCUUUGCUGGUGUUGCUAUUGCUGUUGCAUUUGCAUCUGUGUUUUCGCUUUUAG ........--------...........((((((((((............(((((.((.....((((((...)).)))).....)).)))))(((....)))..)))))))).))...... ( -22.10) >DroYak_CAF1 98 110 + 1 CAUUUUGA--------CC-CCCCUUUUGCAAAACACAAUAAUUU-UUUUGCAGCCAUUUCCCCACUGCCUUGGUGCUGUUGCUAUUGCUGUUGCAUUUGCAUCUGUGUUUUCGCUUUUAG ........--------..-........((((((((((.......-....((((...........))))...(((((...(((..........)))...))))))))))))).))...... ( -22.20) >consensus CAUUUUGA________CCCCCCCGUUCGCAAAACACAAUCAUUU_UUUUGCAGUCAUUUCCCCACCGCUUUGGUGGUGUUGCUAUUGCUGUUGCAUUUGCAUCUGUGUUUUCGCUUUUAG ...........................((((((((((............(((((.((.....((((((....)))))).....)).)))))(((....)))..)))))))).))...... (-22.61 = -22.83 + 0.23)
Location | 3,109,485 – 3,109,604 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -25.16 |
Consensus MFE | -23.71 |
Energy contribution | -23.27 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.44 |
Structure conservation index | 0.94 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668453 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3109485 119 - 27905053 CUAAAAGCGAAAACACAGAUGCAAAUGCAACAGCAAUAGCAACACCACCAAAGCGGUGGGGAAAUGACUGCAAAA-AAAUGAUUGUGUUUUGCGAACGGGGGGGGGGGGGGUUCAAAAUG ......((.(((((((((.(((....)))...(((.........(((((.....))))).........)))....-......)))))))))))((((.............))))...... ( -27.59) >DroSim_CAF1 2399 112 - 1 CUAAAAGCGAAAACACAGAUGCAAAUGCAACAGCAAUAGCAACACCAGCAAAGCGGUGGGGAAAUGACUGCAAAAAAAAUGAUUGUGUUUUGCGAACGGGGGGG--------UCAAAAUG ((....((.(((((((((.(((....))).(((..((..(..((((.((...))))))..)..))..)))............))))))))))).....))....--------........ ( -24.10) >DroYak_CAF1 98 110 - 1 CUAAAAGCGAAAACACAGAUGCAAAUGCAACAGCAAUAGCAACAGCACCAAGGCAGUGGGGAAAUGGCUGCAAAA-AAAUUAUUGUGUUUUGCAAAAGGGG-GG--------UCAAAAUG ......((.(((((((((.(((...(((....)))...)))...........(((((.(.....).)))))....-......)))))))))))........-..--------........ ( -23.80) >consensus CUAAAAGCGAAAACACAGAUGCAAAUGCAACAGCAAUAGCAACACCACCAAAGCGGUGGGGAAAUGACUGCAAAA_AAAUGAUUGUGUUUUGCGAACGGGGGGG________UCAAAAUG ......((.(((((((((.(((...(((....)))...)))...........(((((.(.....).)))))...........)))))))))))........................... (-23.71 = -23.27 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:24 2006