Locus 9189

Sequence ID 3R_DroMel_CAF1
Location 24,505,357 – 24,505,451
Length 94
Max. P 0.541646
window14699

overview

Window 9

Location 24,505,357 – 24,505,451
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 89.04
Mean single sequence MFE -23.68
Consensus MFE -20.12
Energy contribution -19.80
Covariance contribution -0.32
Combinations/Pair 1.21
Mean z-score -1.32
Structure conservation index 0.85
SVM decision value 0.02
SVM RNA-class probability 0.541646
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24505357 94 + 27905053
CAGAGGGCUUUAUUAAUUCCUCUUUCUUGUAUUAAAUCUCCUGUGACUCACAGGGGAUUAGGACACAGUCUGAACGAGCGAACAAAAACGAGUU
.(((((..((....))..)))))..(((((....(((((((((((...))))))))))).((((...))))................))))).. ( -25.50)
>DroSec_CAF1 4035 94 + 1
CAGAGGUCUUUAUUAAUUCCUCUUUCUUGUAUUAAGUCUCCUGUGACUCACAGCAGAUUAGGACACAGUCUGAACGAGCGAACAAAAACGAGUU
.(((((..((....))..)))))..(((((....(((((.(((((...))))).))))).((((...))))................))))).. ( -18.90)
>DroSim_CAF1 4049 93 + 1
CAGGGGGCU-UAUUAAGUCCUCUUUCUUGUAUUAAGUCUCCUGUGACUCACAGGGGAUUAGGACACAGUCUGAACGAGCGAACAAAAACGAGUU
.((((((((-.....))))))))..(((((....(((((((((((...))))))))))).((((...))))................))))).. ( -29.40)
>DroEre_CAF1 3965 94 + 1
CAGCACGCUUUAUGAAUUCCUCUUUCUUGUAUUAAAUCUUCUGUGAUUCACAGGGGGUUAGGACACAGUCUGAGUGAGCGAACAAAAACGAGUU
..((.(((((..((...((((.............(((((((((((...)))))))))))))))..))....))))).))............... ( -21.01)
>DroYak_CAF1 4055 94 + 1
CAACAGUAUUUUUAGAUGCCUCUUUCUUGUAUUAAAUCUCCUGUGAUUCACAGGGGAUUAGGACACAGUCUGAGUGAGCGAAGAAAAACGAGUU
.....(((((....)))))(((((((((((....(((((((((((...))))))))))).((((...))))......)).))))))...))).. ( -23.60)
>consensus
CAGAGGGCUUUAUUAAUUCCUCUUUCUUGUAUUAAAUCUCCUGUGACUCACAGGGGAUUAGGACACAGUCUGAACGAGCGAACAAAAACGAGUU
................((((((.(((........(((((((((((...))))))))))).((((...))))))).))).)))............ (-20.12 = -19.80 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:33 2006