Locus 9188

Sequence ID 3R_DroMel_CAF1
Location 24,503,921 – 24,504,012
Length 91
Max. P 0.866015
window14698

overview

Window 8

Location 24,503,921 – 24,504,012
Length 91
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 78.56
Mean single sequence MFE -20.68
Consensus MFE -9.56
Energy contribution -10.84
Covariance contribution 1.28
Combinations/Pair 1.17
Mean z-score -2.53
Structure conservation index 0.46
SVM decision value 0.85
SVM RNA-class probability 0.866015
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24503921 91 - 27905053
CAGGCCAAACGACUGUCUCCACACUGAAUGGGAUAGAAAUUAAGCAUAA-----UAUAACUUAAUGGCCACAAAACAAAGUUCAACAUACAUUGUC
..((((......(((((.(((.......))))))))..((((((.....-----.....)))))))))).....((((.((.......)).)))). ( -19.10)
>DroSec_CAF1 2612 91 - 1
CAGGCCAAACGACUGUCUCCACACUGAUUGGGAUAGAAAUUACGCAUCA-----UGCGCGUUAAGGGCUACAACACAAAGUCCACCAUCCAUUGUC
..((...((((.(((((.(((.......))))))))......(((....-----.)))))))..(((((.........))))).)).......... ( -20.20)
>DroSim_CAF1 2653 91 - 1
CAGGCCAAACGACUAUCUCCACACUGAGUGGGAUAGAAAUUAAGCAUAA-----UAUACCUUAAUGGCUACAAAACAAAGUUCAACAUACAUUGUA
..((((......(((((.((((.....)))))))))..((((((.....-----.....)))))))))).....((((.((.......)).)))). ( -20.60)
>DroEre_CAF1 2585 91 - 1
CAGGCCAAACGACUGUCUCCACAAUGAGUGGGAUAGAAAUUAAGCAUAA-----UAUACCUUAAUGGCUAGAAAACAAAGUUCAACAUAGCUUGUA
..((((......(((((.((((.....)))))))))..((((((.....-----.....)))))))))).....((((.(((......))))))). ( -20.60)
>DroYak_CAF1 2620 91 - 1
CAGGCCAAACGACUGUCUCCACAAUGAGUGGGAUAGAAAUUAAGCAUAA-----UCUACCUUAAUGGCUAAAAAACAAAGUUCCACAUAGCUUGUA
..((((......(((((.((((.....)))))))))..((((((.....-----.....)))))))))).....((((.(((......))))))). ( -20.60)
>DroAna_CAF1 2545 88 - 1
CAGGGCAAAUGACAGACUCCACUUAUACUCAAGUGGAAGUUUAGUGUAAAAUGGUUUACCUUAAUGGCUA-AACCUAAAGUUCAAAAGA-------
..((((.....(((((((((((((......)))))).))))).)).......((((((((.....)).))-))))....))))......------- ( -23.00)
>consensus
CAGGCCAAACGACUGUCUCCACACUGAGUGGGAUAGAAAUUAAGCAUAA_____UAUACCUUAAUGGCUACAAAACAAAGUUCAACAUACAUUGUA
..((((......(((((.(((.......))))))))..((((((...............))))))))))........................... ( -9.56 = -10.84 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:32 2006