| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,500,528 – 24,500,630 |
| Length | 102 |
| Max. P | 0.560255 |
| Location | 24,500,528 – 24,500,630 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.31 |
| Mean single sequence MFE | -16.10 |
| Consensus MFE | -4.31 |
| Energy contribution | -4.70 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.27 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24500528 102 + 27905053 UUUU-GAU---A-UUUCACUGCUCCAUGUGCAUG-ACUAAAGCCAUGCAUGUUUAUCUAUGUGAACAA---ACUAUAUCAACAUCGUAUAAAAAACAAUCUCUCUCUUCCU ..((-(((---(-((((((......(((((((((-........)))))))))........)))))...---...))))))).............................. ( -16.64) >DroSim_CAF1 55318 102 + 1 UUUU-GAU---A-UUUCACUGCUCCAUGUGCAUG-ACUAAAGCCAUGCAUGUUUAUCUAUGUGAAAAA---ACUAUAUCAACAUCGUAUAAAAUACAAUCACUCUCUUCCU ..((-(((---(-((((((......(((((((((-........)))))))))........)))))...---...)))))))....((((...))))............... ( -17.04) >DroEre_CAF1 52223 97 + 1 UUUU-AAU---A-UUUCACUGCCCCAUGUGCAUG-ACUAAAGCCAUGCAUGUUUAUCCAUGUGAAAAA---ACUAUAUCAACAUCGUAUAAAAUACAAUCUCUCUC----- ....-...---.-((((((((....(((((((((-........))))))))).....)).))))))..---..............((((...))))..........----- ( -15.50) >DroWil_CAF1 47568 91 + 1 UUUU-ACCGACGCUUGUACAUAUGCAUGUACAUGUACAACUGCAUUGCAUGAUUGUUUUU--------------CUAUCAAC----UAAACUAAACAAUCU-UCUCUUAUU ....-..(((.((((((((((.((....)).))))))))..)).)))...((((((((..--------------........----......)))))))).-......... ( -14.99) >DroYak_CAF1 52525 97 + 1 UUUU-GAU---A-UUUCACUGCCUCAUGUGCAUG-ACUAAAGCCAUGCAUGUUUAGCCAUGUGAAAAA---ACUAUAUCAACAUCGUAUAAAAUACAAUCUCUCUC----- ..((-(((---(-((((((.((...(((((((((-........)))))))))...))...)))))...---...)))))))....((((...))))..........----- ( -19.60) >DroAna_CAF1 39321 98 + 1 UUCUCGAU---U-UUCAGCAGCUCCAAGUGCAUG-CCUAGAGCCGUGCAUGUUUAUCUAUAGAAAAAAAUAACUAUAUCAACAUCGAAUUAAACACAGACUCU-------- ...(((((---.-..............(((((((-.(....).)))))))(((....(((((..........)))))..))))))))................-------- ( -12.80) >consensus UUUU_GAU___A_UUUCACUGCUCCAUGUGCAUG_ACUAAAGCCAUGCAUGUUUAUCUAUGUGAAAAA___ACUAUAUCAACAUCGUAUAAAAUACAAUCUCUCUC_____ ...........................(((((((.........)))))))............................................................. ( -4.31 = -4.70 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:31 2006