Locus 9185

Sequence ID 3R_DroMel_CAF1
Location 24,495,901 – 24,496,021
Length 120
Max. P 0.595376
window14694

overview

Window 4

Location 24,495,901 – 24,496,021
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -25.95
Consensus MFE -23.14
Energy contribution -22.95
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -1.43
Structure conservation index 0.89
SVM decision value 0.12
SVM RNA-class probability 0.595376
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24495901 120 + 27905053
ACCUAGCACCGAACAAAAAUCCCGUUCCCAGAUGGACAUACAAAAUCAUUAGGAGCCUAACCACCGGCAUCAAGUACGUGAUAUUGACCUCCAACAAUGGGUGGGAAACCCAACAACCAA
...................(((((..((((..((((....(((.(((((...(((((........))).))......))))).)))...))))....))))))))).............. ( -25.50)
>DroSec_CAF1 38878 120 + 1
ACCUAGCACCGAACAAGAAUCCCGUUCCCAGAUGGACAUACAAAAUCAUUAGCAGCCUAACCACCGGCAUCAAGUACGUGAUAUUGACCUCCAAUAAUGGGUGGGAAACCCAACAACCAA
...................(((((..((((..((((....(((.(((((..((.(((........))).....))..))))).)))...))))....))))))))).............. ( -23.40)
>DroSim_CAF1 50733 119 + 1
ACCUAGCACCGAC-CAGAAUCCCGUUCCCAGAUGGACAUACAAAAUCAUUAGGAGCCUAACCACCGGCAUCAAGUACGUGAUAUUGACCUCCAAUAAUGGGUGGGAAACCCAACAACCAA
.............-.....(((((..((((..((((....(((.(((((...(((((........))).))......))))).)))...))))....))))))))).............. ( -25.50)
>DroEre_CAF1 45285 120 + 1
ACCUGGCGCCGAACAAAAAUCCCGUUCCUAGGUGGACAUACAAAAUCAUAAGGAGCCUAACCACAGGCAACAAGUACGUGAUCUUGACCUCCAACAAUGGGUGGGAAACCCAAGAACCAG
..((((((((((((.........))))...))))...........((....(((((((......))))..((((........))))...))).....(((((.....))))).)).)))) ( -29.40)
>consensus
ACCUAGCACCGAACAAAAAUCCCGUUCCCAGAUGGACAUACAAAAUCAUUAGGAGCCUAACCACCGGCAUCAAGUACGUGAUAUUGACCUCCAACAAUGGGUGGGAAACCCAACAACCAA
...................(((((..((((..((((....(((.(((((..(..(((........)))..)......))))).)))...))))....))))))))).............. (-23.14 = -22.95 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:28 2006