Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,494,899 – 24,495,098 |
Length | 199 |
Max. P | 0.915320 |
Location | 24,494,899 – 24,495,018 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.39 |
Mean single sequence MFE | -25.45 |
Consensus MFE | -18.55 |
Energy contribution | -20.55 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.11 |
Mean z-score | -1.95 |
Structure conservation index | 0.73 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24494899 119 + 27905053 GUUUCUCUUUAAGCUUAUUU-UUCGAUAUCUUCAGUUCUACUUUCAAGCUUGUACCAUGAAGAUGCACGAGCUACGAUAUCUAAUUAUUACUUUGAGCUUGUUCCUAAGUAAGCUCAAGG ......((((.(((((((((-...((((((((((....(((..........)))...)))))))).(((((((.(((...............))))))))))))..))))))))).)))) ( -26.66) >DroSec_CAF1 37875 120 + 1 UUUUCUAUUUAAGCUUAUUUUUUCAAUAUCUUCAGUUCUACUUUCAAGCUCGUACCAUGAAGAUGCACGAGCUACGAUAUCUAAUUAUUACUUUGAGCUUGUUCCUAAGUGAGCUUAAGG .......(((((((((((((......((((((((....(((..........)))...)))))))).(((((((.(((...............))))))))))....))))))))))))). ( -27.86) >DroSim_CAF1 49731 120 + 1 UUUUCUAUUUAAGCUUAUUUUUUCAAUAUCUUCAGUUCUACUUUCAAGCUCGUACCAUGAAGAUGCACGAGCUACGAUAUCUAAUUAUUACUUUGAGUUUGUUCCUAAGUGAGCUUAAGG .......(((((((((((((....((((..(((((...........(((((((..(((....))).)))))))..((((......))))...)))))..))))...))))))))))))). ( -27.30) >DroEre_CAF1 44287 120 + 1 GUCUCUCAAUAACCCAAUUGCUCUGCUACCUUCAGUACUUCCUUCAAGCUCAAACCAUGAAGAUGCACGAGCUACGAUAUCUACUUAUUACUCUGAGCCUGUUUCUGAGUGAGCAUAAAG .((.((((..(((......(((((((...(((((.......................)))))..))).))))...........((((......))))...)))..)))).))........ ( -20.00) >consensus GUUUCUAUUUAAGCUUAUUUUUUCAAUAUCUUCAGUUCUACUUUCAAGCUCGUACCAUGAAGAUGCACGAGCUACGAUAUCUAAUUAUUACUUUGAGCUUGUUCCUAAGUGAGCUUAAGG .......(((((((((((((....((((..(((((...........(((((((..(((....))).)))))))..((((......))))...)))))..))))...))))))))))))). (-18.55 = -20.55 + 2.00)
Location | 24,494,978 – 24,495,098 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -25.39 |
Energy contribution | -26.33 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.22 |
Mean z-score | -2.12 |
Structure conservation index | 0.80 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24494978 120 + 27905053 CUAAUUAUUACUUUGAGCUUGUUCCUAAGUAAGCUCAAGGACGAUAAGAUUCUUUGGUGAACUAAUGUGACAAUCAUUUCUUGCAGCUGUGGGAAAUGUCAAGUCCUUUUGCCAGAUCAC ....(((((.(((((((((((........)))))))))))..)))))((((...(((..((.....(.(((...(((((((..(....)..)))))))....)))).))..))))))).. ( -35.00) >DroSec_CAF1 37955 120 + 1 CUAAUUAUUACUUUGAGCUUGUUCCUAAGUGAGCUUAAGGACAAUAAGACUCUUUGGCCAACUAAUGUGACAAUCAUUUCUUGCAGCUGUGGGAAAUGCCAAGUCCUUUUGCCAGAUCAC ....(((((.(((((((((..(......)..)))))))))..))))).....((((((..((....))(((...(((((((..(....)..)))))))....))).....)))))).... ( -31.50) >DroSim_CAF1 49811 120 + 1 CUAAUUAUUACUUUGAGUUUGUUCCUAAGUGAGCUUAAGGACGAUAAGACUCUUUGGCCAACUAAUUUGACAAUCAUUUCUUGCAGCUGUGGGAAAUGUCAAGUCCAUAUGCCAGAUCAC ....(((((.(((((((((..(......)..)))))))))..))))).....((((((......((((((((....(((((..(....)..)))))))))))))......)))))).... ( -32.00) >DroEre_CAF1 44367 116 + 1 CUACUUAUUACUCUGAGCCUGUUUCUGAGUGAGCAUAAAGACCUCAG----UUCGGGUCAACCAAAGUGACAAUCAUUUCUUGCAGCUGUGGGAAAUGCCAAGUCCUAUUGCCAGAUCAC .......((((((.(((.....))).))))))(((....(((((...----...)))))......((.(((...(((((((..(....)..)))))))....)))))..)))........ ( -29.20) >consensus CUAAUUAUUACUUUGAGCUUGUUCCUAAGUGAGCUUAAGGACGAUAAGACUCUUUGGCCAACUAAUGUGACAAUCAUUUCUUGCAGCUGUGGGAAAUGCCAAGUCCUUUUGCCAGAUCAC ..........((((((((((..(....)..))))))))))............((((((.....((((.(((...(((((((..(....)..)))))))....))))))).)))))).... (-25.39 = -26.33 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:23 2006