Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,494,587 – 24,494,686 |
Length | 99 |
Max. P | 0.753710 |
Location | 24,494,587 – 24,494,686 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 94.61 |
Mean single sequence MFE | -20.87 |
Consensus MFE | -17.12 |
Energy contribution | -17.57 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.60 |
Structure conservation index | 0.82 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24494587 99 + 27905053 AAUGCAUACUCUAAUUAUUAUCAAUGCGAGCCUAAUCAGCCAUUUAAAAAUCAACUUGAAUCAUUGAUAUCUUUGGUAUGUACCCCAAAAGUAUGCAGA ..((((((((........((((((((.((......))....((((((........))))))))))))))..(((((........))))))))))))).. ( -20.50) >DroSec_CAF1 37524 99 + 1 AAUGCAUACUCUAACUAUUAUCACAGCGAGCCUAAUCAGGCGUUUAAAAAUCAACUUGAAUCAUUGAUAUCUUUGGUAUGUACCCAAAAAGUAUGCAGA ..((((((((........(((((......((((....))))((((((........))))))...)))))..(((((.......))))).)))))))).. ( -21.40) >DroSim_CAF1 49378 99 + 1 AAUGCAUACUCUAACUAUUAUCAAAGCGAGCCAAAUCAGGCGUUUAAAAAUCAACUUGAAUCAUUGAUAUCUAUGGUAUGUACCCCAAAAGUAUGCAGA ..((((((((........((((((.....(((......)))((((((........))))))..))))))....(((........)))..)))))))).. ( -20.70) >consensus AAUGCAUACUCUAACUAUUAUCAAAGCGAGCCUAAUCAGGCGUUUAAAAAUCAACUUGAAUCAUUGAUAUCUUUGGUAUGUACCCCAAAAGUAUGCAGA ..((((((((........((((((.....(((......)))((((((........))))))..)))))).....(((....))).....)))))))).. (-17.12 = -17.57 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:21 2006