Locus 9181

Sequence ID 3R_DroMel_CAF1
Location 24,492,410 – 24,492,502
Length 92
Max. P 0.555954
window14685

overview

Window 5

Location 24,492,410 – 24,492,502
Length 92
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 74.06
Mean single sequence MFE -21.50
Consensus MFE -13.47
Energy contribution -12.42
Covariance contribution -1.05
Combinations/Pair 1.27
Mean z-score -1.20
Structure conservation index 0.63
SVM decision value 0.04
SVM RNA-class probability 0.555954
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24492410 92 + 27905053
CCUUAGGCCGUCU--------------UCCGCGUUGCAUGUGAGCAUAUCGUGUGCUCAAUUAGUCAUUGCAUUAGUCGGCUUCUGUGUGUCUAAUUGAUGUAUUU
....((((((.((--------------...(((.((.((.(((((((.....)))))))....)))).)))...)).))))))..(((..((.....))..))).. ( -26.60)
>DroPse_CAF1 41542 83 + 1
CCU---------U--------------GAGGUAUCGCAUGUGAACACAUCAUGUACUCAAUUAGUCAUUACAUUAGUCGGCCACUAUGUAUCUAAUUGAUGUAUUU
...---------(--------------((.((.(((....)))))...))).((((((((((((....(((((.(((.....)))))))).)))))))).)))).. ( -16.80)
>DroEre_CAF1 41856 105 + 1
CCUUAGGGCUUC-GAAUUCCAGAUUAGCCCGCGUUGCAUGUGAGCAUAUCGUGUACUCAAUUAGUCAUUGCAUUAGUCGGCUUCUGUGUGUCUAAUUGAUGUAUUU
.....(((((((-........))..)))))(((.(((......)))...)))((((((((((((.(((.(((..((....))..)))))).)))))))).)))).. ( -29.80)
>DroYak_CAF1 45779 105 + 1
CCUUAGGGCUUC-GAAUUCCAGAUUAGGCCGCGUUGCAUGUGAGCAUAUCGUGUACUCAAUUAGUCAUUGCAUUAGACGGCUUCUGUGUGUCUAAUUGAUGUAUUU
......((((((-........))...))))(((.(((......)))...)))((((((((((((.(((.(((..((....))..)))))).)))))))).)))).. ( -25.00)
>DroAna_CAF1 32528 83 + 1
---------GUCU--------------GCUAGAUUGCAUGCUAACACAUCGUGUUCUCAAUUAGUCAUUACAUUAGCCGGCUCCUAUGUAUUUAAUUGAUGUAUUU
---------((.(--------------((......))).)).(((((...))))).((((((((....(((((.((....))...))))).))))))))....... ( -14.00)
>DroPer_CAF1 36650 83 + 1
CCU---------U--------------GAGGUAUCGCAUGUGAACACAUCAUGUACUCAAUUAGUCAUUACAUUAGUCGGCCACUAUGUAUCUAAUUGAUGUAUUU
...---------(--------------((.((.(((....)))))...))).((((((((((((....(((((.(((.....)))))))).)))))))).)))).. ( -16.80)
>consensus
CCU_______UCU______________GCCGCAUUGCAUGUGAACACAUCGUGUACUCAAUUAGUCAUUACAUUAGUCGGCUUCUAUGUAUCUAAUUGAUGUAUUU
...................................(((((.........)))))((((((((((....(((((.((.......))))))).)))))))).)).... (-13.47 = -12.42 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:20 2006