Locus 9179

Sequence ID 3R_DroMel_CAF1
Location 24,488,182 – 24,488,296
Length 114
Max. P 0.709043
window14682

overview

Window 2

Location 24,488,182 – 24,488,296
Length 114
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 79.02
Mean single sequence MFE -20.72
Consensus MFE -11.18
Energy contribution -12.63
Covariance contribution 1.45
Combinations/Pair 1.14
Mean z-score -2.48
Structure conservation index 0.54
SVM decision value 0.37
SVM RNA-class probability 0.709043
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24488182 114 - 27905053
GCAUUUACCU-AAUAUUAGGGUACCCCAAAAAGUAUGCAAUUCUUUUUGCAAACUCAUAUACUUAGGUCUGAUAGUCAAAGG--ACACCAUUAUACCAUUAUAAACCAUCUAUAAUU
..(((.((((-((.....(((...)))....(((.(((((......))))).))).......))))))..))).(((....)--))...........((((((.......)))))). ( -17.50)
>DroSec_CAF1 31192 116 - 1
GCAUUUACUU-ACUAUUAAGGGACCCCAAAGAGUAUGCAAUUCUUUUUGCAAACUCAUAUACAAAGGUCUGAUAGUCAAACUCCAGACCAUUAUCAUAAUAUAUAACAUGUCUCUCG
..........-.......((((((......((((.(((((......))))).)))).........((((((..((.....)).))))))....................)))))).. ( -26.90)
>DroSim_CAF1 43027 109 - 1
GCAUUUACUUGACCAUUAAGGGACCCCAAAGAGUAUGCAAUUCUUUUUGCAAACUCAUAUACAA---UCUGAUAAUCAAA-----GGACACCAUCAUAAUAUAAAACAUGUCUCUCC
........((((..((((.((....))...((((.(((((......))))).))))........---..))))..)))).-----(((((..................))))).... ( -17.77)
>consensus
GCAUUUACUU_ACUAUUAAGGGACCCCAAAGAGUAUGCAAUUCUUUUUGCAAACUCAUAUACAAAGGUCUGAUAGUCAAA____AGACCAUUAUCAUAAUAUAAAACAUGUCUCUCC
..................((((((......((((.(((((......))))).)))).............((((.(((........))).))))................)))))).. (-11.18 = -12.63 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:18 2006