Locus 9178

Sequence ID 3R_DroMel_CAF1
Location 24,485,848 – 24,485,938
Length 90
Max. P 0.827995
window14681

overview

Window 1

Location 24,485,848 – 24,485,938
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 80.23
Mean single sequence MFE -20.23
Consensus MFE -15.06
Energy contribution -15.17
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.67
Structure conservation index 0.74
SVM decision value 0.70
SVM RNA-class probability 0.827995
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24485848 90 - 27905053
----GUUGCG-GAAGGGGGGGAGGGGGCGGAAAUCCGCAAAUGUGCAAGUUAAAUAUUGAAAAGUAUUUGUUGAUUGUACGCAGUAAACGA-ACAU
----.((((.-...............((((....))))....((((((..((((((((....))))))))....)))))))))).......-.... ( -23.40)
>DroPse_CAF1 34805 86 - 1
----------GGGAACGCCUUCUGGGUCGGAAAUCCGCAAAUGUACAAGUUAAAUAUUGAAAAGUAUUCGUUGAUUGUACGCCAUAAACGAAACAC
----------(((....)))..((((.(((....))))....((((((....((((((....))))))......)))))).)))............ ( -15.90)
>DroSec_CAF1 28923 95 - 1
GCAGGGUGCGGGGAAGGGGGGAGGUGGCGGAAAUCCGCAAAUGUGCAAGUUAAAUAUUGAAAAGUAUUUGUUGAUUGUACGCAGUAAACGA-ACAU
....(.(((.................((((....))))....((((((..((((((((....))))))))....))))))))).)......-.... ( -23.50)
>DroSim_CAF1 40743 95 - 1
GCAGGGUGCGGGGAAGGGGGGAGGUGGCGGAAAUCCGCAAAUGUGCAAGUUAAAUAUUGAAAAGUAUUUGUUGAUUGUACGCAGUAAACGA-ACAU
....(.(((.................((((....))))....((((((..((((((((....))))))))....))))))))).)......-.... ( -23.50)
>DroAna_CAF1 26349 72 - 1
-----------------------GGGUCGGAAAUCCGCAAAUGUGCAAGUUAAAUAUUGAAAAGUAUUUGUUGAUUGUACGCAGUAAACGA-ACAU
-----------------------..(.(((....))))....((((((..((((((((....))))))))....))))))...........-.... ( -15.80)
>DroPer_CAF1 29982 86 - 1
----------GGGCACGCCUUCUGGGUCGGAAAUCCGCAAAUGUACAAGUUAAAUAUUGAAAAGUAUUCGUUGAUUGUACGCCAUAAACGAAACAC
----------.(((...((....))(.(((....))))....((((((....((((((....))))))......)))))))))............. ( -19.30)
>consensus
__________GGGAAGGGGGGAGGGGGCGGAAAUCCGCAAAUGUGCAAGUUAAAUAUUGAAAAGUAUUUGUUGAUUGUACGCAGUAAACGA_ACAU
.........................(.(((....))))....((((((..((((((((....))))))))....))))))................ (-15.06 = -15.17 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:17 2006