Locus 9177

Sequence ID 3R_DroMel_CAF1
Location 24,485,689 – 24,485,793
Length 104
Max. P 0.659196
window14680

overview

Window 0

Location 24,485,689 – 24,485,793
Length 104
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 75.46
Mean single sequence MFE -23.39
Consensus MFE -16.91
Energy contribution -16.93
Covariance contribution 0.03
Combinations/Pair 1.10
Mean z-score -0.95
Structure conservation index 0.72
SVM decision value 0.26
SVM RNA-class probability 0.659196
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24485689 104 + 27905053
C------AUUACCUUUUAGCAUCGGCGCCUCUGGGGCAUUGCUACGAUUUGGUAAUCUGCUUUCGAACUCGAGCUCC--GAGUCCAGUUCC-CCUUUCCCGGAUGCCAAUCGA
.------.........(((((...((.((...)).))..)))))(((((.((((..........(.(((((.....)--)))).)...(((-........)))))))))))). ( -27.30)
>DroPse_CAF1 34661 92 + 1
CCCCCCCAUAUCCUUUUAGCAUCGGCACCUCUUGGGCAUUGCUCCGAUUUGGUAAUCCACUUUUGAGCUUG---------------------UUGUUUCCGUAUACCAAUCGA
.................((((...((.((....))))..)))).(((((.((((....((....((((...---------------------..))))..)).))))))))). ( -16.70)
>DroEre_CAF1 33566 104 + 1
C------AUUACCUUUUAGCAUCGGCGCCUCUGGGGCAUUGCUACGAUUUGGUAAUCUGCUUUCGAACUCGAGCUCG--AAGUCCAGCUCC-CUUUUCCCGGAUGCCAAUCGA
.------.........(((((...((.((...)).))..)))))(((((.((((.((((.....(((...(((((.(--....).))))).-...))).))))))))))))). ( -28.60)
>DroYak_CAF1 39074 107 + 1
C------AUUACCUUUUAGCAUCGGCGCCUCUGGGGCAUUGCUACGAUUUGGUAAUCUGCUUUCGAACUCGGGCUUGAGAAGUCCAGCUCCCCUUUUCCCGGAUGCCAAUCGA
.------.........(((((...((.((...)).))..)))))(((((.((((.((((.....((.((.(((((.....))))))).)).........))))))))))))). ( -28.24)
>DroAna_CAF1 26169 86 + 1
C------AUAUCCUUUUAGCAUUGGCACCUCUUGGGCAUUGCUACGAUUUGGUAAUCUACUUUUGA--------------------GCUCC-UUGUUUCCGGAUACCAAUCGA
.------.........(((((...((.((....))))..)))))(((((.((((.(((......((--------------------((...-..))))..)))))))))))). ( -20.90)
>DroPer_CAF1 29838 92 + 1
CCCCCCCAUAUCCUUUUAGCAUCGGCACCUCUUGGGCAUUGCUACGAUUUGGUAAUCCACUUUUGAGCUUG---------------------UUGUUUCCGUAUACCAAUCGA
................(((((...((.((....))))..)))))(((((.((((....((....((((...---------------------..))))..)).))))))))). ( -18.60)
>consensus
C______AUAACCUUUUAGCAUCGGCACCUCUGGGGCAUUGCUACGAUUUGGUAAUCUACUUUCGAACUCG_______________GCUCC_CUGUUCCCGGAUACCAAUCGA
................(((((...((.((....))))..)))))(((((.((((.(((..........................................)))))))))))). (-16.91 = -16.93 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:16 2006