Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,482,202 – 24,482,305 |
Length | 103 |
Max. P | 0.892667 |
Location | 24,482,202 – 24,482,305 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.15 |
Mean single sequence MFE | -27.66 |
Consensus MFE | -9.36 |
Energy contribution | -11.12 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.21 |
Mean z-score | -2.25 |
Structure conservation index | 0.34 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24482202 103 - 27905053 GAAGGGUAGUAUGUACUUCAUAUGCGUUUUGGUAAGUCCACUGCAGUUCGUCAUAAUGGUAUAUACCCCUA-UAGAAAAGUAU-AGAUUUUUCUAUUA----C-------CUUAUU ..(((((((((((((((...((((((..(((...((....)).)))..)).))))..)))))))))....(-(((((((((..-..))))))))))))----)-------)))... ( -28.20) >DroSec_CAF1 25316 103 - 1 GAGGGGUAGUAUGUACUUCAUAUGCGUUUUGGUGAGUCCACUGCAGUUCGUCAUAAUGGUAUAUACCCCAA-UAGAAAAGUAU-AGAUUUUUCUAUUA----C-------CUUAUU ((((((..(((((((((...((((((..((((((....)))..)))..)).))))..))))))))).))((-(((((((((..-..))))))))))).----)-------)))... ( -30.80) >DroSim_CAF1 37139 103 - 1 GAGGGGUAGUAUGUACUUCAUAUGCGUUAUGGUGAGUCCACUGAAGUUCGUCAUAAUGGUAUAUAUCCCUA-UACGAAAGUAU-GGAUUUUUCUAUUA----C-------CUUAUU ..(((((((((........((((((((((((..((.((....))...))..)))))).))))))....(((-(((....))))-)).......)))))----)-------)))... ( -28.80) >DroEre_CAF1 30089 111 - 1 GAGGGGUAGUAUGGACUUCAUAUGCGGUUGGCUAAGUCCACUGCAGUUCGACCCAAUAAUACAAAGGUAUAGUACAUAAGUAU-AGGCUUUUCUAGUA----CAUACAAUCUUUUU (((((((.(((((.(((.....((((((.(((...))).)))))).................((((((...((((....))))-..))))))..))).----))))).))))))). ( -25.10) >DroYak_CAF1 35523 115 - 1 GAGGGGUAGAAUGGACUUCAGAUGCGUUUGGCCAAGUCCACUGCAGUUAGACAAAAUAAAAAAUACCCCUA-UAGAAAAGUAUUCGGUUUUUCUAGUAGAGACAUACAAACUAUAU .(((((((...(((((((((((....)))))...))))))(((....))).............))))))).-((((((((.......))))))))(((......)))......... ( -25.40) >consensus GAGGGGUAGUAUGUACUUCAUAUGCGUUUUGGUAAGUCCACUGCAGUUCGUCAUAAUGGUAUAUACCCCUA_UAGAAAAGUAU_AGAUUUUUCUAUUA____C_______CUUAUU .(((((((((((((.....)))))).........((....)).....................)))))))..(((((((((.....)))))))))..................... ( -9.36 = -11.12 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:15 2006