Locus 9174

Sequence ID 3R_DroMel_CAF1
Location 24,474,243 – 24,474,333
Length 90
Max. P 0.920954
window14676

overview

Window 6

Location 24,474,243 – 24,474,333
Length 90
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.76
Mean single sequence MFE -21.00
Consensus MFE -16.80
Energy contribution -16.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.80
SVM decision value 1.14
SVM RNA-class probability 0.920954
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24474243 90 + 27905053
---------CCCCCAGGAGCCCCAC-----UCAUCAGCACCAC--CAU--CAUCAUACCCACUGCAGCACGCUUAUGAUAAAUGAGUUGUUUUCACAAUGCGGUGGCA
---------......((.((.....-----......)).))..--...--........(((((((((((.((((((.....)))))))))........)))))))).. ( -19.40)
>DroSec_CAF1 17337 93 + 1
---------CCCCUAGGAGCC-CACUAC-UUCAUCAGCACCAC--CAU--CGUCAUCCCCACUGCAGCACGCUUAUGAUAAAUGAGUUGUUUUUACAAUGCGGUGGCA
---------......((.((.-......-.......)).))..--...--........((((((((....((((((.....))))))(((....))).)))))))).. ( -19.34)
>DroSim_CAF1 29149 93 + 1
---------CCCCUAGGAGCCCCACUAC--UCAUCAGCACCAC--CAU--CAUCAUCCCCACUGCAGCACGCUUAUGAUAAAUGAGUUGUUUUCACAAUGCGGUGGCA
---------......((.((........--......)).))..--...--........(((((((((((.((((((.....)))))))))........)))))))).. ( -19.14)
>DroEre_CAF1 20870 106 + 1
UCCCCCCUCCCCCCAGGAGCGCCACUCCCCCCAUCAGCACCAU--CAUGCCAUCAGCCCCACUGCAGCACGCUUAUGAUAAAUGAGUUGUUUUCACAAUGCGGUGGCA
......((((.....)))).((((((..........(((....--..))).....((........((((.((((((.....))))))))))........)))))))). ( -22.89)
>DroYak_CAF1 27247 103 + 1
--CCACUGCCCCCCAGGAGCUCCACUCC--UCAUCA-UACCAUACCAUACCAUCAUCCCCACUGCAGCACGCUUAUGAUAAAUGAGUUGUUUUCACAAUGCGGUGGCA
--............(((((.....))))--).....-.....................(((((((((((.((((((.....)))))))))........)))))))).. ( -22.10)
>DroPer_CAF1 18748 76 + 1
---------C----------CCUAC-----CCAAC----UCCC--CGU--GCUGCCACCCACUGCAGCACGCUUAUGAUAAAUGAGUUGUUUUUAUAAUGCGGUGGCG
---------.----------.((((-----(((..----....--.((--(((((........)))))))((((((.....))))))...........)).))))).. ( -23.10)
>consensus
_________CCCCCAGGAGCCCCACU_C__UCAUCAGCACCAC__CAU__CAUCAUCCCCACUGCAGCACGCUUAUGAUAAAUGAGUUGUUUUCACAAUGCGGUGGCA
..........................................................(((((((((((.((((((.....)))))))))........)))))))).. (-16.80 = -16.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:12 2006