| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,451,186 – 24,451,277 |
| Length | 91 |
| Max. P | 0.554854 |
| Location | 24,451,186 – 24,451,277 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 62.74 |
| Mean single sequence MFE | -28.12 |
| Consensus MFE | -8.06 |
| Energy contribution | -7.87 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.29 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24451186 91 - 27905053 -------CG-----CGGAUUUUGCGUUAAUGCUGUUUGCCAACGCAUUAACAUGCAGCCAG-----------CACCGAUCGCAUUACGCAUAC---GCCACGUGUGCAGCAAACCAU -------..-----.((..(((((((((((((.(((....))))))))))).(((.....)-----------)).............((((((---(...))))))).))))))).. ( -26.80) >DroVir_CAF1 37001 104 - 1 GUGUGUGUGUGUA-CGUUGGUUGUGCUAAUGUUGUUUGCCAACGCAUUAACAUGGCUCG----CC-AAU---UGGCAUUUACGUUACGCAUAC---GCCACGUGU-UCGCGCUCCAU (((((((((((((-(((.(((..((.((((((.(((....))))))))).))..))).(----((-...---.)))....))).)))))))))---).)))(((.-...)))..... ( -36.30) >DroPse_CAF1 36066 110 - 1 -------AGGGGACGGCACCCAGCGUUAAUGUUGUUUGCCAACGCAUUAACAUGCAACCAAGGCCCCAGGCACAGCCGUCACAUUACGCAUAUGCCGCCACGUGUCCACCUAACGGU -------(((((((((((..(((((....)))))..)))).((((((....))))......(((....((((....(((......)))....)))))))..)))))).)))...... ( -34.80) >DroEre_CAF1 25037 91 - 1 -------CG-----AGUAUUUUGCGUUAAUGCUGUUUGCCAACGCAUUAACAUGCAGCCAG-----------CACCGAUCGCAUUACGCAUAC---GCCACGUGUGCAGCAAACCAU -------..-----.(((...(((((((((((.(((....))))))))))).(((.....)-----------))......))).)))((((((---(...))))))).......... ( -26.20) >DroWil_CAF1 28828 83 - 1 -------CG-------G----------AUUGUUGUUUGUCGAUGCAUUAACAUGCACCU----CCUAAG---CAACAAGCGCAUUACGUAUAC---GCCAUGUGUCUGUCUGCGUUU -------..-------.----------.((((((((((..(.(((((....))))).).----.).)))---))))))(((((..(((.((((---.....)))).))).))))).. ( -21.60) >DroAna_CAF1 26144 89 - 1 -------CG-------AAUCGAUCGUUAAUGCUGUUUGCCAACGCAUUAACAUGCAUCGAG-----------CAACUAGCGCAUUACGCAUAC---GCCACGUGUGCACCCAUCCAC -------..-------..(((((.((((((((.(((....)))))))))))....)))))(-----------(.....)).......((((((---(...))))))).......... ( -23.00) >consensus _______CG______GGAUCUUGCGUUAAUGCUGUUUGCCAACGCAUUAACAUGCAGCCAG___________CAACAAUCGCAUUACGCAUAC___GCCACGUGUGCAGCAAACCAU ........................((((((((.(((....))))))))))).............................((((...((.......))...))))............ ( -8.06 = -7.87 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:06 2006