Locus 917

Sequence ID 3R_DroMel_CAF1
Location 3,107,073 – 3,107,164
Length 91
Max. P 0.575194
window1453

overview

Window 3

Location 3,107,073 – 3,107,164
Length 91
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 74.61
Mean single sequence MFE -27.66
Consensus MFE -15.54
Energy contribution -18.30
Covariance contribution 2.76
Combinations/Pair 1.17
Mean z-score -1.64
Structure conservation index 0.56
SVM decision value 0.08
SVM RNA-class probability 0.575194
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3107073 91 + 27905053
----CACUCCCUCUAGGAGACCAGAACACGCUCAGAAGCAAAACAA-AGCCAGCUGUGGCUGCUUGGCUGGCUUUCUUCUUGGUUUUUCUGCACGU
----..((((.....))))..(((((...(((.(((((......((-(((((((((........)))))))))))))))).)))..)))))..... ( -30.30)
>DroSec_CAF1 33670 94 + 1
-UCACACUCACUCCAGGACACCAGGACUCGCUCAGAAGCAAAACAA-AGCCAGCUGUGGCUGCUUGGCUGGCUUUCUUCUGGGUUUUUCUGCACGU
-....................(((((...(((((((((......((-(((((((((........))))))))))))))))))))..)))))..... ( -30.30)
>DroEre_CAF1 33469 95 + 1
CACACACUCACUCCAGGACACCAGGACACGCUCAGAAGCAAAACAA-AGCCAGCUGUGGCUGCUUGGCUGGCUUUCUUCAGGGUUUCUCUGCACGU
...........(((.((...)).)))...((..((((((.....((-(((((((((........))))))))))).......))))))..)).... ( -27.20)
>DroWil_CAF1 47494 80 + 1
CACAUACACAGCGGAAGAGACAAG-UGUGGCAGGCAAGCAAAACAAAAGCCAGCUG------CUU----UUCUUUC---UUAACG--UCUGCACGU
..........(((((.((((.(((-.(..((.(((.............))).))..------)..----..)))))---))....--))))).... ( -19.72)
>DroYak_CAF1 32062 91 + 1
CCAAG----ACACCAGGACCCCAGGACACGCUCAGAAGGAAAACAA-AGCCAGCUGUGGCUGCUUGGCUGGCUUUCUUCUGGGUUUUUCUGCACGU
.....----............(((((...(((((((((((......-(((((((((........))))))))))))))))))))..)))))..... ( -30.80)
>consensus
CACACACUCACUCCAGGACACCAGGACACGCUCAGAAGCAAAACAA_AGCCAGCUGUGGCUGCUUGGCUGGCUUUCUUCUGGGUUUUUCUGCACGU
.....................(((((...(((((((((.........(((((((((........)))))))))..)))))))))..)))))..... (-15.54 = -18.30 +   2.76) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:21 2006