Locus 9169

Sequence ID 3R_DroMel_CAF1
Location 24,442,553 – 24,442,644
Length 91
Max. P 0.595697
window14665

overview

Window 5

Location 24,442,553 – 24,442,644
Length 91
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 93.09
Mean single sequence MFE -12.80
Consensus MFE -12.26
Energy contribution -12.33
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.32
Structure conservation index 0.96
SVM decision value 0.13
SVM RNA-class probability 0.595697
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24442553 91 + 27905053
CAUCCACAUC------CACAUCAUCCACGCCCACUGGCUGUGCACACAAAAAUACAUAUACUUGUCAUCAUUUUUCCUGCGCUUGUCUUUACGCGCA
..........------...........(((.....(((.(((((...(((((((((......)))....))))))..)))))..))).....))).. ( -13.50)
>DroSim_CAF1 16560 87 + 1
----CACAUC------CACAUCAUCCACGCCCACUGGCUGUGCACACAAAAAUACAUAUACUUGUCAUCAUUUUUCCUGCGCUUGUCUUUACGCGCA
----......------...........(((.....(((.(((((...(((((((((......)))....))))))..)))))..))).....))).. ( -13.50)
>DroEre_CAF1 15864 91 + 1
CAUCCACAUC------CACAUCAUCCACGCCCACUGGCUGUGCACACAAAAAUACAUAUACUUGUCAUCAUUUUUCCUGAGCUUGUCUUUACGCGCA
..........------...........(((.....(((...((.((.(((((((((......)))....))))))..)).))..))).....))).. (  -9.20)
>DroYak_CAF1 17564 97 + 1
CAUCCACAUCUACGCCCACAUCAUCCACGCCCAGUGGCUGUGCACACAGAAAUACAUAUACUUGUCAUCAUUUUUCCUGCGCUUGUCUUUACGCGCA
............(((.........((((.....))))..(((((...(((((((((......)))....))))))..)))))..........))).. ( -15.00)
>consensus
CAUCCACAUC______CACAUCAUCCACGCCCACUGGCUGUGCACACAAAAAUACAUAUACUUGUCAUCAUUUUUCCUGCGCUUGUCUUUACGCGCA
...........................(((.....(((.(((((...(((((((((......)))....))))))..)))))..))).....))).. (-12.26 = -12.33 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:03 2006