| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,431,148 – 24,431,250 |
| Length | 102 |
| Max. P | 0.587963 |
| Location | 24,431,148 – 24,431,250 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 81.07 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -20.91 |
| Energy contribution | -21.80 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24431148 102 + 27905053 ACAACC-AUGUAUAUUAUUGUAAUUUCUGUUGCCAGUUGGCUGCGAAAAGUA-U---GCGAAGCGCUGAA-AGACUGCCGC-CGCGCUACUGAAUGCAGCCACGGA--AGG-- ....((-............(((((....)))))..((.(((((((...((((-.---(((..((((....-.....).)))-..)))))))...))))))))))).--...-- ( -29.90) >DroPse_CAF1 6313 99 + 1 ACAACU-AUGU--AUUAUUGUAAUUUUUGUUGCAAGUUGGCUG--AAAAGUAAU---GCGAAGCGCUGAAAAGACGGCCGCCCGCGCUACU--AAGCAGCCACGGA--CCA-- ......-....--....(((((((....)))))))((.(((((--...((((.(---(((..((((((......))).))).)))).))))--...)))))))...--...-- ( -29.70) >DroGri_CAF1 5616 105 + 1 AAAUUUUUUGUAUA-UAUUGUAAUUUCUGUUCCAAGUUGGCUGAAAAAAGUAUU---GCAAAGCGCUGAAAAGACGGUCGC-CAAGCUA-CAAAAACAGCCACAAA--GCGGA ..............-..........((((((....((.(((((......(((..---((...((((((......))).)))-...))))-).....)))))))..)--))))) ( -19.50) >DroYak_CAF1 6106 105 + 1 ACAACC-AUGUAUAUUAUUGUAAUUUCUGUUGCAAGUUGGCUGUGAAAAGUA-UGCUGCGAAGCGCUGAA-AGACGGCCGC-CGCGCUACUGAAAGCAGCCACAGA--AGG-- ....((-..........(((((((....)))))))((.((((((....((((-.((.(((..((((((..-...))).)))-)))))))))....))))))))...--.))-- ( -33.30) >DroAna_CAF1 5441 105 + 1 ACAAUCAAUGUAUAUUAUUGUAAUUUCUGUUGCAAGUUGGCUGAGAAAAGUA-U---GCGAAGCGCUGAA-AGAAGGUCGC-AGCGUUGCUAUAACCAGCCACGGACCAGG-- .................(((((((....)))))))((.(((((.(....(((-.---(((..((((((..-.(.....).)-)))))))))))..))))))))........-- ( -24.20) >DroPer_CAF1 6244 99 + 1 ACAACU-AUGU--AUUAUUGUAAUUUUUGUUGCAAGUUGGCUG--AAAAGUAAU---GCGAAGCGCUGAAAAGACGGCCGCCCGCGCUACU--AAGCAGCCACGGA--CCA-- ......-....--....(((((((....)))))))((.(((((--...((((.(---(((..((((((......))).))).)))).))))--...)))))))...--...-- ( -29.70) >consensus ACAACC_AUGUAUAUUAUUGUAAUUUCUGUUGCAAGUUGGCUG_GAAAAGUA_U___GCGAAGCGCUGAA_AGACGGCCGC_CGCGCUACU_AAAGCAGCCACGGA__ACG__ .................(((((((....)))))))((.(((((.....((((.....(((..((((((......))).)))...))))))).....))))))).......... (-20.91 = -21.80 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:03 2006