Locus 9167

Sequence ID 3R_DroMel_CAF1
Location 24,428,117 – 24,428,226
Length 109
Max. P 0.556813
window14663

overview

Window 3

Location 24,428,117 – 24,428,226
Length 109
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 76.62
Mean single sequence MFE -22.75
Consensus MFE -18.17
Energy contribution -18.23
Covariance contribution 0.06
Combinations/Pair 1.10
Mean z-score -0.72
Structure conservation index 0.80
SVM decision value 0.05
SVM RNA-class probability 0.556813
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24428117 109 + 27905053
AACGCUGUGAGAUUAAUU--UAAGCGUCGGCU-AAGCUAUGUGAUGCGAAUGUAUA--UUAUAA--AUCAAUUCUGUGUAACACGCAGCCUCGUUACAACUGCAAAUCAAAUGCAC
...((((((.........--...((((((.(.-.......)))))))((((.....--......--....)))).........))))))...........((((.......)))). ( -19.06)
>DroVir_CAF1 1181 105 + 1
AACGCUGUGAGAUAAAUG--AAAGCGUCGGCU-AAGCUAUGUUAUGCGAAUGUAUA--UGAAAA--GUUUGUUCAGUGUAACACGCAGCCUCGUUACAAU--UUAAUAUAUUA--G
...((((((.........--..(((....)))-......(((((((((((((....--(....)--...))))).))))))))))))))...........--...........--. ( -20.00)
>DroPse_CAF1 2309 101 + 1
AACGCUGUGAGAUGAAUG--AUAGCGUCGGCU-AAGCUAUGUUAUGCGAAUGUAAA--CCAAAU--CACUAUUCAGUGUAACACGCAGCCUCGUUACACU--CAUAUAAA------
.....((((((.((....--.(((((..((((-..((..(((((((((((((....--......--...))))).)))))))).)))))).)))))))))--))))....------ ( -23.52)
>DroGri_CAF1 1448 111 + 1
AACGCUGUGAGAUUAAUAGAAAAGCGUCGGCUUACGCUAUGUUAUGCGAAUGUAG---UUAAAUGCCCCUAUUCAGCGUAACACGCAGCCUCGUUACAAACGUAAAUCAAUUA--C
...((((((.............(((((......))))).(((((((((((((..(---(.....))..).)))).))))))))))))))....((((....))))........--. ( -27.60)
>DroWil_CAF1 1117 104 + 1
AACGCUGUAAGAUAAAUG--AAAGCGUCGGCUUACGCUAUGUUAUGCGAAUGUAAGAUUUAUUU--GCCAAUUCAGUGUAACACGCAGCCUCGUUACAUUUAAGAAUC--------
............((((((--..((((..((((((((((..(((..(((((((.......)))))--)).)))..))))))......)))).)))).))))))......-------- ( -22.10)
>DroAna_CAF1 2530 96 + 1
AACGCUGUGAGAUGAAUC--CUAGCGUCGGCU-AAGCUAUGUUAUGCGAAUGUAGA--UC-UGU--UCCAAUUCAGUGUAACACGCAGCCUCGUUACAAUACCA------------
.((((((.((......))--.)))))).((((-..((..((((((((((((...((--..-...--))..)))).)))))))).))))))..............------------ ( -24.20)
>consensus
AACGCUGUGAGAUAAAUG__AAAGCGUCGGCU_AAGCUAUGUUAUGCGAAUGUAAA__UUAAAU__CCCAAUUCAGUGUAACACGCAGCCUCGUUACAAU__CAAAUCAA______
...((((((...................(((....))).((((((((((((...................)))).))))))))))))))........................... (-18.17 = -18.23 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:02 2006