Locus 9165

Sequence ID 3R_DroMel_CAF1
Location 24,427,250 – 24,427,349
Length 99
Max. P 0.827868
window14661

overview

Window 1

Location 24,427,250 – 24,427,349
Length 99
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.01
Mean single sequence MFE -27.11
Consensus MFE -21.97
Energy contribution -21.47
Covariance contribution -0.50
Combinations/Pair 1.16
Mean z-score -1.55
Structure conservation index 0.81
SVM decision value 0.70
SVM RNA-class probability 0.827868
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24427250 99 + 27905053
-UCCACAGUCCCAGCUCCGCAUAGCAAUGUUCGAUGUGCUUGUGCGGCGUUU-GUGACUGUAAGAAUAAA-UUC--CAGCCAGUAUUAUAUCAUUGUUG-UUGGU
-...(((((((.(((.((((((((((..........))).))))))).))).-).)))))).........-..(--((((((((........))))..)-)))). ( -29.40)
>DroVir_CAF1 515 99 + 1
AUGGACAGUCCCAGCUCCGCAUAGCAAUGUUUGAUGUGUCUGUGCGGCGUUUCAUGACUGUAAGAGAAA--UGU---UGCACAUAUUAUAUCUUUGUUA-AUUGG
.(((......)))...(((..((((((.....((((((..(((((((((((((............))))--)))---))))))...)))))).))))))-..))) ( -27.80)
>DroPse_CAF1 1246 101 + 1
AUACACAGUCCCAGCUCCGCAUAGCAAUGUUUGAUGUGUCUGUGCGGCGUUUCAUGACUGUAAAAUGAAA-UCC--CAGCCAGUAUUAUAUCAUUGUUG-CUGGU
....((((((..(((.((((((((((..........)).)))))))).)))....)))))).........-...--..(((((((.((......)).))-))))) ( -30.40)
>DroGri_CAF1 514 102 + 1
AUAGACAGUCCCAGCUCCGCAUAGCAAUGUUUGAUGUGUCUGUGCGGCGUUUCAUGGCUGUAACAUAAA--UGUUAUUGCACAUAUUAUAUCGCUGUUG-AUGAG
...((((((...(((.((((((((((..........)).)))))))).)))..(((((.((((((....--)))))).)).)))........)))))).-..... ( -28.30)
>DroWil_CAF1 523 102 + 1
GUAUACAGUCCCAGCUCCGCAUAGCAAUGUUUGAUGUGUCUAUGCGGCGUUUUUUGGCUGUAAAAUGAAUGUAU--UGACUCAUAUUAUAUCUAUGUUGACUAG-
...(((((((..(((.((((((((((..........)).)))))))).)))....)))))))...........(--..((...............))..)....- ( -23.36)
>DroMoj_CAF1 515 96 + 1
A---ACAGUCCCAGCUCCGCAUAGCAAUGUUUGAUGUGUCUGUGCGGCGUUCAUUGACUGUAAUAGAAA--UCU---CGCACGUAUUAUAUCUUUGUUG-CUUAG
.---((((((..(((.((((((((((..........)).)))))))).)))....))))))........--...---.(((((...........)).))-).... ( -23.40)
>consensus
AUACACAGUCCCAGCUCCGCAUAGCAAUGUUUGAUGUGUCUGUGCGGCGUUUCAUGACUGUAAAAUAAA__UCU___AGCACAUAUUAUAUCUUUGUUG_CUGGG
....((((((..(((.((((((((((..........)).)))))))).)))....))))))............................................ (-21.97 = -21.47 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:00 2006