Locus 9163

Sequence ID 3R_DroMel_CAF1
Location 24,423,418 – 24,423,533
Length 115
Max. P 0.992025
window14658

overview

Window 8

Location 24,423,418 – 24,423,533
Length 115
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 94.70
Mean single sequence MFE -16.10
Consensus MFE -16.10
Energy contribution -16.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 1.00
SVM decision value 2.30
SVM RNA-class probability 0.992025
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24423418 115 - 27905053
CCAUCUCCAAUCCACUUACGAGCGCAAAUAUUUACACAAUUUACUCGAAAACGGAGGUAUGAGCAUAUAAUAUUUCCAAAAACGAUGGCAAACA--CACCACACACACCAAGCGAAA
(((((.............((((.....................)))).....((((((((.........))))))))......)))))......--..................... ( -16.10)
>DroSec_CAF1 16858 115 - 1
CCAUCUCCAAUCCACUUACGAGCGCAAAUAUUUACACAAUUUACUCGAAAACGGAGGUAUGAGCAUAUAAUAUUUCCAAAAACGAUGGCAAACA--CACCACACACACCAAGCGAAA
(((((.............((((.....................)))).....((((((((.........))))))))......)))))......--..................... ( -16.10)
>DroSim_CAF1 14530 115 - 1
CCAUCUCCAAUCCACUUACGAGCGCAAAUAUUUACACAAUUUACUCGAAAACGGAGGUAUGAGCAUAUAAUAUUUCCAAAAACGAUGGCAAACA--CACCACACACACCAAGCGAAA
(((((.............((((.....................)))).....((((((((.........))))))))......)))))......--..................... ( -16.10)
>DroEre_CAF1 17687 115 - 1
CCAUCUCCAAUCCACUUACGAGCGCAAAUAUUUACACAAUUUACUCGAAAACGGAGGUAUGAGCAUAUAAUAUUUCCAAAAACGAUGGCAAACA--CACCACACACACCCAGAGAAA
(((((.............((((.....................)))).....((((((((.........))))))))......)))))......--..................... ( -16.10)
>DroYak_CAF1 21758 117 - 1
CCAUCUCCAAUCCACUUACGAGCGCAAAUAUUUACACAAUUUACUCGAAAACGGAGGUAUGAGCAUAUAAUAUUUCCAAAAACGAUGGCAAACACACACCACACACACCCAGAGAAA
(((((.............((((.....................)))).....((((((((.........))))))))......)))))............................. ( -16.10)
>DroAna_CAF1 20096 102 - 1
CCAUCUCCAAUCCACUUACGAGCGCAAAUAUUUACACAAUUUACUCGAAAACGGAGGUAUGAGCAUAUAAUAUUUCCAAAAACGAUGGCAAACA--CA---CACGC----------A
(((((.............((((.....................)))).....((((((((.........))))))))......)))))......--..---.....----------. ( -16.10)
>consensus
CCAUCUCCAAUCCACUUACGAGCGCAAAUAUUUACACAAUUUACUCGAAAACGGAGGUAUGAGCAUAUAAUAUUUCCAAAAACGAUGGCAAACA__CACCACACACACCAAGCGAAA
(((((.............((((.....................)))).....((((((((.........))))))))......)))))............................. (-16.10 = -16.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:57 2006