Locus 9162

Sequence ID 3R_DroMel_CAF1
Location 24,422,479 – 24,422,575
Length 96
Max. P 0.978159
window14657

overview

Window 7

Location 24,422,479 – 24,422,575
Length 96
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 77.89
Mean single sequence MFE -25.05
Consensus MFE -14.52
Energy contribution -14.30
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -2.66
Structure conservation index 0.58
SVM decision value 1.81
SVM RNA-class probability 0.978159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24422479 96 - 27905053
AAUUGCACUGCGAUAUUAAUCCUUGAGACC--------ACUCU-----GUCCAGCC----AAUUUGGUCACUUCCCAUCACGAUGACCGCCUUCAUUAGCCGGAGUGCAUUCU
...((((((.((..............((((--------(...(-----(......)----)...)))))............(((((......)))))...)).)))))).... ( -20.80)
>DroPse_CAF1 20163 109 - 1
AAUUGCACUGCGAUAUUAAUCCUUGAGCCAUUCAUCUCACCCCCUAUGGUCGCAUC----CUUUUGGCCACUUCCCAUCAUGAUGACCAUUUUCAUUAGAUGGAGUGCAUUCU
...(((((((((((.........((((........)))).........)))))...----..............(((((.((((((......))))))))))))))))).... ( -28.87)
>DroSim_CAF1 13642 96 - 1
AAUUGCACUGCGAUAUUAAUCCUUGAGCCC--------ACUCC-----GUCCAGCC----AAUUUGGUCACUUCCCAUCACGAUGACCGCCUUCAUUAGCCGGAGUGCAUUCU
.(((((...)))))..........(((..(--------(((((-----(.......----.....(((((..((.......)))))))((........)))))))))..))). ( -20.60)
>DroYak_CAF1 20731 96 - 1
AAUUGCACUGCGAUAUUAAUCCCAGAGCCC--------ACUCU-----GUCCAGCC----AAUUUGGUCACUUCCCAUCACGAUGACCGCUUUCAUUAGCCGGAGUGCAUUCU
...((((((.((..........(((((...--------.))))-----).......----.....(((((..((.......)))))))(((......))))).)))))).... ( -24.40)
>DroAna_CAF1 18892 108 - 1
AAUUGCACUGCGAUAUUAAUCCUUAUGUCGCCCCUACCACCCU-----UACAGGACUCUACUUUUGGCGGCUUCCCAUCUCGAUGACCAUUUUCAUUAGCCGAAGUGCAGUCU
.(((((((((((((((........))))))).........((.-----....)).........(((((((....)).....(((((......))))).))))))))))))).. ( -27.60)
>DroPer_CAF1 20267 109 - 1
AAUUGCACUGCGAUAUUAAUCCUUGAGCCAUUCAUCUCACCCCCUAUCGUCGCAUC----CUUUUGGCCACUUCCCAUCAUGAUGACCAUUUUCAUUAGAUGGAGUGCAUUCU
...(((((((((((..((.....((((........)))).....))..)))))...----..............(((((.((((((......))))))))))))))))).... ( -28.00)
>consensus
AAUUGCACUGCGAUAUUAAUCCUUGAGCCC________ACCCC_____GUCCAGCC____AAUUUGGCCACUUCCCAUCACGAUGACCACUUUCAUUAGCCGGAGUGCAUUCU
...((((((.((....................................................(((.......)))....(((((......)))))...)).)))))).... (-14.52 = -14.30 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:56 2006