| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,422,270 – 24,422,361 |
| Length | 91 |
| Max. P | 0.966486 |
| Location | 24,422,270 – 24,422,361 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 92.89 |
| Mean single sequence MFE | -23.85 |
| Consensus MFE | -22.12 |
| Energy contribution | -21.15 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.966486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24422270 91 + 27905053 UCGGAUUGUCCACAGGAUUUUCCCACCUUAAUCCUUGGCCAUGGCUGUGUUUUUGUUAUGGAUUGACUUUGGCCGACAAAAAUAUUGGCAU ..(((..((((...))))..)))....(((((((.((((...(((...)))...)))).))))))).....(((((........))))).. ( -21.30) >DroSec_CAF1 15764 91 + 1 UCGGAUUGUCCACAGGAUUUUCCCACCUUAAUCCUUGGCCAUGGAUGUGUUUUUGUUAUGGCUUGACUUUGGCCGACAAAAAUAUUGGCAU ..(((..((((...))))..)))..............((((.....(((((((((((..((((.......))))))))))))))))))).. ( -26.30) >DroSim_CAF1 13433 91 + 1 UCGGAUUGUCCACAGGAUUUUCCCACCUUAAUCCUUGGUCAUGGCUGUGUUUUUGUUAUGGCUUGACUUUGGCCGACAAAAAUAUUGGCAU ......((.(((.((((((..........))))))))).))((.(.(((((((((((..((((.......))))))))))))))).).)). ( -26.60) >DroEre_CAF1 16550 91 + 1 UCGGAUUGUCCACAGGAUUUUCCCACCUUAAUCCUUGGCCAUGGCUGUGUUUUUGUUAUGGCUUGACUUUGGCUGACGAAAAUAUUGGUAU ..(((..((((...))))..))).(((.........(((....)))(((((((((((..((((.......))))))))))))))).))).. ( -24.40) >DroYak_CAF1 20520 91 + 1 ACGGAUUGUCCACAGGAUUUUCCCACCUUAAUCCUUGGCCAUGGCUGUGUUUUUGUUAUGGCUUGACUUUGGCUGACGAAAAUAUUGGCAU ..(((..((((...))))..)))..............((((.....(((((((((((..((((.......))))))))))))))))))).. ( -24.30) >DroAna_CAF1 18645 90 + 1 UCGGAUUGUCCCUAGGAUUUUCCCACC-UAAUCCUUCGUCGGGUCUGUGUUUUUGUUAUGGCUUGACUUUGGCCGGUAAAAAUAUUUGUAU ..(((..((((...))))..))).(((-....((...((((((((.(((.......)))))))))))...))..))).............. ( -20.20) >consensus UCGGAUUGUCCACAGGAUUUUCCCACCUUAAUCCUUGGCCAUGGCUGUGUUUUUGUUAUGGCUUGACUUUGGCCGACAAAAAUAUUGGCAU ..(((..((((...))))..)))..............((((.....(((((((((((..((((.......))))))))))))))))))).. (-22.12 = -21.15 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:55 2006