Locus 9160

Sequence ID 3R_DroMel_CAF1
Location 24,422,039 – 24,422,135
Length 96
Max. P 0.883379
window14655

overview

Window 5

Location 24,422,039 – 24,422,135
Length 96
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 79.26
Mean single sequence MFE -26.31
Consensus MFE -17.22
Energy contribution -17.72
Covariance contribution 0.50
Combinations/Pair 1.16
Mean z-score -1.95
Structure conservation index 0.65
SVM decision value 0.93
SVM RNA-class probability 0.883379
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24422039 96 + 27905053
------CCAACCAA-------UCCAAUCCCAUGGCGCAAUCACUUGAAGCGAGCAACGCUGCGGCAGCCGCAAGAUGAAAUUAAAUUAAACUUCAAGUGGCCGCAAGGA
------....((..-------.(((......))).((..((((((((((((.....)))(((((...)))))...................)))))))))..))..)). ( -24.90)
>DroPse_CAF1 19639 105 + 1
---CUUCCACCCA-UCCACUAGCCAAUCCCAUGGCGCAAUCACUUGAAGCAAACGACGUUACGGCAGCCGCAAGAAAAAAUUAAAUUAAAUUUCAAGUGUCCGCAAUGG
---.......(((-(......((((......))))((...((((((((((...((......))...))(....).................))))))))...)).)))) ( -23.00)
>DroGri_CAF1 14860 103 + 1
----ACCCGCC-AAUC-AACAGCCAAUCCCUGAGCGCCGCCACUUGAAUCAAGCGAUGCUGCGCCAGCCGCAAGAAAAAAUUAAAUUAAACUUCAAGUGGCCGCAAUGU
----.......-....-.(((((((.....)).))((.((((((((((((....))(((.((....)).)))...................)))))))))).))..))) ( -26.30)
>DroMoj_CAF1 15584 107 + 1
ACUGCCGCACC-AAUC-GACAGCCAAUCCCUGGGCGCUGGCACUUGAAUCAAGCGACGCUGCGGCGGCCGCAAGUAAAAAUUAAAUUAAACUUCAAGUGGCCGCAAUGU
...((((((..-....-....(((........)))((...(.((((...)))).)..))))))))((((((((((..............))))...))))))....... ( -30.74)
>DroAna_CAF1 18376 101 + 1
------CCACC-A-CCCACCAGCCAAUCCCAUGGCGCAAUCACUUGAAGCCACCGACGUUGCGGCAGCCGCAAGAAGAAAUUAAAUUAAAUUUCAAGUGGCCGCAAGAA
------.....-.-.......((((......)))).......((((..(((((.....((((((...))))))...((((((......))))))..)))))..)))).. ( -29.10)
>DroPer_CAF1 19737 105 + 1
---CGUCCACCCA-UCCUCUAGCCAAUCCCAUGGCGCCAUCACUUGAAGCAAACGACGUUACGGCAGCCGCAAGAAAAAAUUAAAUUAAACUUCAAGUGUUCGCAAUGG
---.......(((-(......((((......))))((...(((((((((....((......))((....))...................)))))))))...)).)))) ( -23.80)
>consensus
______CCACC_A_UC_ACCAGCCAAUCCCAUGGCGCAAUCACUUGAAGCAAGCGACGCUGCGGCAGCCGCAAGAAAAAAUUAAAUUAAACUUCAAGUGGCCGCAAUGA
.....................((((......))))((...(((((((((........(((.....)))(....)................)))))))))...))..... (-17.22 = -17.72 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:54 2006