Locus 9159

Sequence ID 3R_DroMel_CAF1
Location 24,420,911 – 24,421,002
Length 91
Max. P 0.696024
window14654

overview

Window 4

Location 24,420,911 – 24,421,002
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 77.06
Mean single sequence MFE -30.40
Consensus MFE -17.67
Energy contribution -18.08
Covariance contribution 0.42
Combinations/Pair 1.05
Mean z-score -1.64
Structure conservation index 0.58
SVM decision value 0.34
SVM RNA-class probability 0.696024
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24420911 91 - 27905053
-----GCCCGCCCGCACACAGGCGAUUCAAUGGAGAAGUCACGGCAGGACAAUGGGAAAGUCGUUGGCUGUCUAAUUGCAUCAGCGGCGCUUCCC------U
-----(((((((........)))).(((......))).....)))........(((((.((((((((.(((......)))))))))))..)))))------. ( -30.40)
>DroVir_CAF1 14050 87 - 1
-----G---ACCCGCACA--GC-----CGGCUGAGAAGUCAUUGCAGGACAAUGGAAAAGUCGUUGGCUGUCUAAUUGCAUCAUCGGCGCUUCCAGAGUUAC
-----(---((...(.((--(.-----...))).)..))).......(((..(((((..((((.(((.(((......)))))).))))..)))))..))).. ( -22.60)
>DroPse_CAF1 18233 89 - 1
CUUGUGCUCACCCGCACA--AC-----CAGCUGAGAAGUCAGCGUAGGACAAAGGGAAAGUCGUUGGCUGUCUAAUUGCAUCAGCGACGCUUCCC------U
.((((((......)))))--)(-----(.(((((....)))))...))....((((((.((((((((.(((......)))))))))))..)))))------) ( -35.60)
>DroSim_CAF1 12097 91 - 1
-----GCCCGCCCGCACACAGGCGAUUCAAUGGAGAAGUCACGGCAGGACAAUGGGAAAGUCGUUGGCUGUCUAAUUGCAUCAGCGGCGCUUCCC------U
-----(((((((........)))).(((......))).....)))........(((((.((((((((.(((......)))))))))))..)))))------. ( -30.40)
>DroAna_CAF1 17337 80 - 1
-----AC----CCGCACA--GACGUC-----CUAGAAGUCACGGCAGGACAAUGGGAAAGUCGUUGGCAGUCUAAUUGCAUCAGCGACGCUUCCC------U
-----.(----(.((...--(((...-----......)))...)).)).....(((((.((((((((((((...)))))..)))))))..)))))------. ( -27.80)
>DroPer_CAF1 18302 89 - 1
CUUGUGCUCACCCGCACA--AC-----CAGCUGAGAAGUCAGCGUAGGACAAAGGGAAAGUCGUUGGCUGUCUAAUUGCAUCAGCGACGCUUCCC------U
.((((((......)))))--)(-----(.(((((....)))))...))....((((((.((((((((.(((......)))))))))))..)))))------) ( -35.60)
>consensus
_____GC_CACCCGCACA__GC_____CAGCUGAGAAGUCACGGCAGGACAAUGGGAAAGUCGUUGGCUGUCUAAUUGCAUCAGCGACGCUUCCC______U
.....................................(((.......)))...(((((.((((((((.(((......)))))))))))..)))))....... (-17.67 = -18.08 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:53 2006