Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,417,243 – 24,417,334 |
Length | 91 |
Max. P | 0.540832 |
Location | 24,417,243 – 24,417,334 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -25.47 |
Consensus MFE | -19.97 |
Energy contribution | -20.63 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.78 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24417243 91 - 27905053 UGGAGCACAUGAGCACUCACCACAUGCAGCUCCAACUCCAACUCCAGCUCCAACUUGGGACUCCAGUCGCAGCUUCGGGUUCCACACGGAA ((((((.((((...........))))..))))))..............(((....((((((((.(((....)))..))))))))...))). ( -24.50) >DroEre_CAF1 11610 91 - 1 UGGAGCACAUGAGCACUCACCACAUGCAGCUCCAACUCCAACUACAACUCCGACUUGGGACUCCAGUCGCAGCUUCAGGUUGCACACGGAA ((((((.((((...........))))..))))))..............(((((((.((....))))))(((((.....)))))....))). ( -27.50) >DroYak_CAF1 15328 79 - 1 UGGAGCACAUGAGCACUCACCACAUGCAGCUCCAACUCCAG------------CUUGGGACUCCAGUCGCAGCUUCAGCUUGCACAGGGAG ((((((.((((...........))))..)))))).((((..------------.....(((....)))(((((....)).)))....)))) ( -24.40) >consensus UGGAGCACAUGAGCACUCACCACAUGCAGCUCCAACUCCAACU_CA_CUCC_ACUUGGGACUCCAGUCGCAGCUUCAGGUUGCACACGGAA ((((((.((((...........))))..))))))..(((...................(((....)))(((((.....)))))....))). (-19.97 = -20.63 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:51 2006