Locus 9156

Sequence ID 3R_DroMel_CAF1
Location 24,416,120 – 24,416,226
Length 106
Max. P 0.653534
window14650

overview

Window 0

Location 24,416,120 – 24,416,226
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.75
Mean single sequence MFE -16.18
Consensus MFE -12.47
Energy contribution -12.67
Covariance contribution 0.20
Combinations/Pair 1.05
Mean z-score -1.63
Structure conservation index 0.77
SVM decision value 0.25
SVM RNA-class probability 0.653534
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24416120 106 - 27905053
CCCCGAAAAAAAAAACUAUAUGCCCAGUCCAAAGCUAGCCAUCCAUAUCCCUCCGAUGUGACAUAUUCCGCUCUACAACAAUUAAUUGAAUUGUUUGUACGGACAU
..........................((((..(((........((((((.....)))))).........))).((((((((((.....))))).))))).)))).. ( -17.33)
>DroSec_CAF1 9684 103 - 1
CUC---GAAAAAAAACUAUACGCCCAGUCCAAAGCUAGCCAUCCAUAUCCCUCCGAUGUGACAUAUUCCGCUCUACAACAAUUAAUUGAAUUGUUUGUACGGACAU
...---....................((((..(((........((((((.....)))))).........))).((((((((((.....))))).))))).)))).. ( -17.33)
>DroSim_CAF1 7366 103 - 1
CUC---AAAAAAGAACUAUAUGCCCAGUCCAAAGCUAGCCAUCCAUAUCCCUCCGAUGUGACAUAUUCCGCUCUACAACAAUUAAUUGAAUUGUUUGUACGGACAU
...---....................((((..(((........((((((.....)))))).........))).((((((((((.....))))).))))).)))).. ( -17.33)
>DroEre_CAF1 10440 99 - 1
CCU---AAA----UACUGUACGCCCAGUCCAAAGCCAGCCAUUCAUAUCCCACCGAUGUGACAUAUUCUGCUCUACAACAAUUAAUUGAAUUGUUUGUACGGACAU
...---...----.............((((..(((.((....(((((((.....)))))))......))))).((((((((((.....))))).))))).)))).. ( -19.50)
>DroYak_CAF1 14212 86 - 1
CCU---AAA----UAC-------------CAAAGCUAGCCAUCCAUAUCCCUCCGAUGUGACAUAUUCCGCUCUACAACAAUUAAUUGAAUUGUUUGUACGGACAU
...---...----...-------------..............((((((.....))))))......((((...((((((((((.....))))).)))))))))... ( -14.20)
>DroAna_CAF1 12500 88 - 1
CCC---AGC-------------UCCUUUCCGAAACUUACCAUCCAUAUCC--CCAAUGUGACAUAUUCCGCUCUACAACAAUUAAUUGAAUUGUUUGCACGGACAU
...---...-------------.....((((............(((((..--...))))).........((.....(((((((.....))))))).)).))))... ( -11.40)
>consensus
CCC___AAA____AACUAUA_GCCCAGUCCAAAGCUAGCCAUCCAUAUCCCUCCGAUGUGACAUAUUCCGCUCUACAACAAUUAAUUGAAUUGUUUGUACGGACAU
...........................................((((((.....))))))......((((...((((((((((.....))))).)))))))))... (-12.47 = -12.67 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:50 2006