Locus 9155

Sequence ID 3R_DroMel_CAF1
Location 24,415,749 – 24,415,841
Length 92
Max. P 0.722621
window14649

overview

Window 9

Location 24,415,749 – 24,415,841
Length 92
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.99
Mean single sequence MFE -25.34
Consensus MFE -14.45
Energy contribution -14.57
Covariance contribution 0.12
Combinations/Pair 1.27
Mean z-score -2.01
Structure conservation index 0.57
SVM decision value 0.40
SVM RNA-class probability 0.722621
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24415749 92 + 27905053
ACCCAUGCAACUUAGCACCAGGCUGCUAAUUACAUAUUCGUUGCCUGAAAAAUUAACUUUCCAGCGGCGAAC------------AUUGUAGCAUGCCAGUGGCG
..((((((......))....((((((((........((((((((..((((.......))))..)))))))).------------....))))).))).)))).. ( -26.92)
>DroGri_CAF1 8252 76 + 1
GUUCAUGCAACUUAGCACAUGUCUGCUAAUUAUUUAUUCGUUGCCUGAAAAAUUAACUUUCGAGUUGUGCA----------------------------UGGCG
((.((((((..((((((......)))))).............((.(((((.......))))).))..))))----------------------------)))). ( -14.80)
>DroSec_CAF1 9301 86 + 1
ACCCAUGCAACUUAGCACCAGGCUGCUAAUUACAUAUUCGUUGCCUGAAAAAUUAACUUUCCAGCGGCGAGC------------AUUGUAGC------GUGGCG
..((((((...((((((......)))))).((((..((((((((..((((.......))))..)))))))).------------..))))))------)))).. ( -28.30)
>DroSim_CAF1 6975 92 + 1
ACCCAUGCAACUUAGCACCAGGCUGCUAAUUACAUAUUCGUUGCCUGAAAAAUUAACUUUCCAGCGGCGAAC------------AUUGUAGCAUGGCAGUGGCG
..((((((...((((((......)))))).((((..((((((((..((((.......))))..)))))))).------------..))))))))))........ ( -29.00)
>DroYak_CAF1 13816 92 + 1
ACCCAUGCAACUUAGCACCAGGCUGCUAAUUACAUAUUCGUUGCCUGAAAAAUUAACUUUCCAGCGGCGAAC------------AUUGUAGCAUGCCAGUGGCG
..((((((......))....((((((((........((((((((..((((.......))))..)))))))).------------....))))).))).)))).. ( -26.92)
>DroAna_CAF1 12099 104 + 1
ACUCAUGCAACUUAGCACAUGGCUGCUAAUUAUUUAUUCGUUGCCAGAAAAAUUAACUUUCCAGAAGAAGGCAUGGCUGUUGCUAUUGUUGUACGGCAGUGGCG
..((((((...........((((.((.(((.....))).)).))))..........((((......)))))))))).....(((((((((....))))))))). ( -26.10)
>consensus
ACCCAUGCAACUUAGCACCAGGCUGCUAAUUACAUAUUCGUUGCCUGAAAAAUUAACUUUCCAGCGGCGAAC____________AUUGUAGCAUG_CAGUGGCG
..((((.....((((((......)))))).......((((((((..((((.......))))..))))))))...........................)))).. (-14.45 = -14.57 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:49 2006