Locus 9154

Sequence ID 3R_DroMel_CAF1
Location 24,410,916 – 24,411,036
Length 120
Max. P 0.991680
window14648

overview

Window 8

Location 24,410,916 – 24,411,036
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -39.82
Consensus MFE -39.97
Energy contribution -40.00
Covariance contribution 0.03
Combinations/Pair 1.03
Mean z-score -1.33
Structure conservation index 1.00
SVM decision value 2.28
SVM RNA-class probability 0.991680
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24410916 120 + 27905053
GUCCGCUCGAGUGUCUCUUUGGCUUGAGCUCUUGAAUGUGACUGUUUGCAGAGGGGAACGCUUGUCUACUAUUUGGCUUGCGCUUGCUGCCAACAAAUAUUGUUCGAGCCGCGCUCAAGU
....(((.((((((......(((((((((.....(((((...((((.((((..((...(((..(((........)))..)))))..)))).)))).)))))))))))))))))))).))) ( -40.70)
>DroSec_CAF1 4476 120 + 1
GUCCGCUCGAGUGUCUCUUUGGCUUGAGCUCUUGAAUGUGACUGUUUGCAGAGGGGAACGCUUGUCUACUAUUUGGCUUGCGCUUGCUGCCAACAAAUAUUGUUCGAGCCGCGCUCAAGU
....(((.((((((......(((((((((.....(((((...((((.((((..((...(((..(((........)))..)))))..)))).)))).)))))))))))))))))))).))) ( -40.70)
>DroSim_CAF1 2166 120 + 1
GUCCGCUCGAGUGUCUCUUUGGCUUGAGCUCUUGAAUGUGACUGUUUGCAGAGGGGAACGCUUGUCUACUAUUUGGCUUGCGCUUGCUGCCAACAAAUAUUGUUCGAGCCGCGCUCAAGU
....(((.((((((......(((((((((.....(((((...((((.((((..((...(((..(((........)))..)))))..)))).)))).)))))))))))))))))))).))) ( -40.70)
>DroEre_CAF1 5239 120 + 1
GUCCGCUCGAGUGUCUCUUUGGCUUGAGCUCUUGAAUGUGACUGUUUGCAGAGGGGAACGCUUGUCUACUAUUUGGCUUGCGCUUGCUGCCAACAAAUAUUGUUCGAGCCGCGCUCAAGU
....(((.((((((......(((((((((.....(((((...((((.((((..((...(((..(((........)))..)))))..)))).)))).)))))))))))))))))))).))) ( -40.70)
>DroYak_CAF1 7985 120 + 1
GUCCGCUCGAGUGUCUCUUUGGCUUGAGCUCUUGAAUGUGACUGUUUGCAGAGGGGAACGCUUGUCUACUAUUUGGCUUGCGCUUGCUGCCAACAAAUAUUGUUCGAGCCGCGCUCAAGU
....(((.((((((......(((((((((.....(((((...((((.((((..((...(((..(((........)))..)))))..)))).)))).)))))))))))))))))))).))) ( -40.70)
>DroAna_CAF1 7156 120 + 1
GUCCGCUCGAGUGUCUCUUUGGCUUGAGCUCUUGAAUGUGACUGUUUGCAGAGGGGAACGCUUGUCUACUAUUUGGCUUGCGCUUGCUGCCAACAAAUAUUGUUAAAGCCGCGCUCAAGU
....((((((((.........)))))))).(((((.((((..((((.((((..((...(((..(((........)))..)))))..)))).))))......((....)))))).))))). ( -35.40)
>consensus
GUCCGCUCGAGUGUCUCUUUGGCUUGAGCUCUUGAAUGUGACUGUUUGCAGAGGGGAACGCUUGUCUACUAUUUGGCUUGCGCUUGCUGCCAACAAAUAUUGUUCGAGCCGCGCUCAAGU
....(((.((((((......(((((((((.....(((((...((((.((((..((...(((..(((........)))..)))))..)))).)))).)))))))))))))))))))).))) (-39.97 = -40.00 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:48 2006