| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,401,493 – 24,401,587 |
| Length | 94 |
| Max. P | 0.954453 |
| Location | 24,401,493 – 24,401,587 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.97 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -8.57 |
| Energy contribution | -9.27 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.38 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.954453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24401493 94 + 27905053 ----GUG----UG--UGUGUGUGUGAGUGAGGAAAUGUGUUGAAAAUUUAUUGACAUUAUUCAAUUAAUUAUUGUGCAAAUAUUUUCGCUUGCAACACACAGAU--------- ----((.----((--(((((.((..((((((((.((.(((....((((.(((((......))))).)))).....))).)).))))))))..))))))))).))--------- ( -29.20) >DroVir_CAF1 216149 91 + 1 CACUGGCUCGCUG--ACUCUGUGCACAAGUGGAAAUGUGUUGAAAAUUUAUUGACAUUAUUCAAUUAAUUAUUGUGCAAAUAUUUUAAC-------ACAC------------- ((((.((.((...--....)).))...))))....(((((((((((((.(((((......))))).)))((((.....)))))))))))-------))).------------- ( -16.60) >DroGri_CAF1 211376 91 + 1 AACUAGCUCACUG--CCUCUGUGCACAUGUGGAAAUGUGUUGAAAAUUUAUUGACAUUAUUCAAUUAAUUAUUGUGUAAAUAUUUUCAC-------ACAC------------- .....((.((...--....)).))...(((((((((((((..(.......)..)).((((.((((.....)))).))))))))))))))-------)...------------- ( -16.30) >DroEre_CAF1 238122 102 + 1 ----GUG----UG--UGUGUGUGUGAGUGAGGAAAUGUGUUGAAAAUUUAUUGACAUUAUUCAAUUAAUUAUUGUGCAAAUAUUUUCGCUUGCAGCACACAGAUA-CGCACAU ----(((----(.--((((((((..((((((((.((.(((....((((.(((((......))))).)))).....))).)).))))))))..)).)))))).)))-)...... ( -33.70) >DroWil_CAF1 207389 91 + 1 ----AUG----UG--CUUGUGUGUGUGUGUGGAAAUGUGUUGAAAAUUUAUUGACAUUAUUCAAUUAAUUAUUGUGCAAAUAUUUUCACAU-----ACACAGAGAC------- ----...----..--..(.(.(((((((((((((((((.(((..(((..(((((......))))).....)))...)))))))))))))))-----))))).).).------- ( -25.40) >DroMoj_CAF1 192155 97 + 1 --CUGUCUCUCUUCCGCUCAGUGCACGAAUGGAAAUGUGUUGAAAAUUUAUUGACAUUAUUCAAUUAAUUAUUGUGCAAAUAUUUUAAC-------ACACACAUA-C------ --.........(((((.((.......)).))))).(((((((((((((.(((((......))))).)))((((.....)))))))))))-------)))......-.------ ( -15.40) >consensus ____GUC____UG__CCUCUGUGCACGUGUGGAAAUGUGUUGAAAAUUUAUUGACAUUAUUCAAUUAAUUAUUGUGCAAAUAUUUUCAC_______ACACAGAU_________ ....................(((.....((((((((((.(((..(((..(((((......))))).....)))...)))))))))))))........)))............. ( -8.57 = -9.27 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:41 2006