Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,083,675 – 3,083,799 |
Length | 124 |
Max. P | 0.991689 |
Location | 3,083,675 – 3,083,772 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 94.59 |
Mean single sequence MFE | -20.87 |
Consensus MFE | -17.41 |
Energy contribution | -17.77 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.75 |
Structure conservation index | 0.83 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3083675 97 + 27905053 CGAAAUGAAAUUGAAAUCAAAAAAGAUAUUUUUUAUAUCUUGGCCAUUUGGCAAACA-AACGGCAACUGCCCCCAGCAUUGGCGAUUACCGAAAGGCC ..............((((....(((((((.....))))))).((((((((.....))-)).(((....)))........)))))))).((....)).. ( -21.90) >DroSec_CAF1 9566 97 + 1 CGAAAUGAAAUUGAAAUCAAAAAAGAUACUUUUUAUAUCUUGGCCAUUUGGCAAGCA-AACGGCAACUGCCCCCAGCAUUGGCAAUUACCGAAAGGCC .((.((((((.....(((......)))...)))))).))..((((.(((((......-...(((....)))....((....)).....))))).)))) ( -20.20) >DroSim_CAF1 10662 97 + 1 CGAAAUGAAAUUGAAAUCAAAAAAGAUACUUUUUAUAUCUUGGCCAUUUGGCAUGCA-AACGGCAACUGCCCCCAGCAUUGGCAAUUACCGAAAGGCC .((.((((((.....(((......)))...)))))).))..((((.(((((..(((.-....)))..((((.........))))....))))).)))) ( -20.60) >DroEre_CAF1 9923 97 + 1 CCGAAUGAAAUUGAAAUCAGAAAAGAUACUUUUUAUAUCUUGGCCGUUUGGCAAACA-AACGGCAACUGCCCCCAGCAUUGGCAAUUACCGAAAGGCC ........(((((....(((..((((((.......)))))).((((((((.....))-))))))..)))...((......))))))).((....)).. ( -24.30) >DroYak_CAF1 9502 97 + 1 CAAAAGGAAAUUGAAAUCAAAAAAUAUACUUUUUAUAUCUUGGCCAUUUGGCAAACA-AACGGCAACUGCCCCCAGCAUUGGCAAUUACCGAAAGGCC ....((((...(((((..............)))))..))))((((.(((((......-...(((....)))....((....)).....))))).)))) ( -18.14) >DroAna_CAF1 9682 98 + 1 CCAAAUGAAAUUGAAAUCAAAAAAGAUACUUUUUAUAUCUUAGCCAUUUUGCAAACAAAACGGCAACUGCCGCCAGCAUUGGCAAUUACCGAAAGGCC ..........(((....)))..((((((.......)))))).((((...(((........((((....))))...))).)))).....((....)).. ( -20.10) >consensus CGAAAUGAAAUUGAAAUCAAAAAAGAUACUUUUUAUAUCUUGGCCAUUUGGCAAACA_AACGGCAACUGCCCCCAGCAUUGGCAAUUACCGAAAGGCC ..........(((....)))..((((((.......))))))((((.(((((..........(((....)))....((....)).....))))).)))) (-17.41 = -17.77 + 0.36)
Location | 3,083,675 – 3,083,772 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 94.59 |
Mean single sequence MFE | -28.52 |
Consensus MFE | -25.00 |
Energy contribution | -25.05 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -2.48 |
Structure conservation index | 0.88 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3083675 97 - 27905053 GGCCUUUCGGUAAUCGCCAAUGCUGGGGGCAGUUGCCGUU-UGUUUGCCAAAUGGCCAAGAUAUAAAAAAUAUCUUUUUUGAUUUCAAUUUCAUUUCG ((((....((((((.(((.........))).))))))(((-((.....)))))))))(((((((.....)))))))...(((........)))..... ( -25.20) >DroSec_CAF1 9566 97 - 1 GGCCUUUCGGUAAUUGCCAAUGCUGGGGGCAGUUGCCGUU-UGCUUGCCAAAUGGCCAAGAUAUAAAAAGUAUCUUUUUUGAUUUCAAUUUCAUUUCG ((((....((((((((((.........))))))))))(((-((.....)))))))))(((((((.....)))))))...(((........)))..... ( -29.00) >DroSim_CAF1 10662 97 - 1 GGCCUUUCGGUAAUUGCCAAUGCUGGGGGCAGUUGCCGUU-UGCAUGCCAAAUGGCCAAGAUAUAAAAAGUAUCUUUUUUGAUUUCAAUUUCAUUUCG ((((....((((((((((.........))))))))))(((-((.....)))))))))(((((((.....)))))))...(((........)))..... ( -29.00) >DroEre_CAF1 9923 97 - 1 GGCCUUUCGGUAAUUGCCAAUGCUGGGGGCAGUUGCCGUU-UGUUUGCCAAACGGCCAAGAUAUAAAAAGUAUCUUUUCUGAUUUCAAUUUCAUUCGG ((((....((((((((((.........))))))))))(((-((.....)))))))))(((((((.....)))))))..((((............)))) ( -32.00) >DroYak_CAF1 9502 97 - 1 GGCCUUUCGGUAAUUGCCAAUGCUGGGGGCAGUUGCCGUU-UGUUUGCCAAAUGGCCAAGAUAUAAAAAGUAUAUUUUUUGAUUUCAAUUUCCUUUUG ((((....((((((((((.........))))))))))(((-((.....)))))))))((((((((.....)))))))).................... ( -27.20) >DroAna_CAF1 9682 98 - 1 GGCCUUUCGGUAAUUGCCAAUGCUGGCGGCAGUUGCCGUUUUGUUUGCAAAAUGGCUAAGAUAUAAAAAGUAUCUUUUUUGAUUUCAAUUUCAUUUGG ((((....((((((((((.........))))))))))((((((....))))))))))(((((((.....)))))))...(((........)))..... ( -28.70) >consensus GGCCUUUCGGUAAUUGCCAAUGCUGGGGGCAGUUGCCGUU_UGUUUGCCAAAUGGCCAAGAUAUAAAAAGUAUCUUUUUUGAUUUCAAUUUCAUUUCG ((((...(((((((((((.........)))))))))))...............))))(((((((.....)))))))...................... (-25.00 = -25.05 + 0.06)
Location | 3,083,709 – 3,083,799 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 80.42 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -19.25 |
Energy contribution | -20.17 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.65 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3083709 90 - 27905053 GACUUCUGU------------CCGUCCGGCUGUCUUU-UUGGCCUUUCGGUAAUCGCCAAUGCUGGGGGCAGUUGCCGUU-UGUUUGCCAAAUGGCCAAGAUAU .....((((------------((..(((((.(((...-..))).....(((....)))...)))))))))))..((((((-((.....))))))))........ ( -29.50) >DroVir_CAF1 10197 72 - 1 GACUUCUGU------------CGGUCU-ACUGCCUAUGUUGGCCUUUUGUU-AUUACCAAUGCUGCCGGCAUUUA-----------GCCAA-------AGGUAU (((....))------------)(((..-...))).......((((((.(((-(.....(((((.....)))))))-----------)).))-------)))).. ( -16.70) >DroSec_CAF1 9600 90 - 1 GACUUCUGU------------CCGUCCGGCUGUCUGU-UUGGCCUUUCGGUAAUUGCCAAUGCUGGGGGCAGUUGCCGUU-UGCUUGCCAAAUGGCCAAGAUAU (((....))------------).....((((....((-(((((....(((((((((((.........)))))))))))..-.....)))))))))))....... ( -32.50) >DroSim_CAF1 10696 90 - 1 GACUUCUGU------------CCGUCCGGCUGUCUGU-UUGGCCUUUCGGUAAUUGCCAAUGCUGGGGGCAGUUGCCGUU-UGCAUGCCAAAUGGCCAAGAUAU (((....))------------).....((((....((-(((((....(((((((((((.........)))))))))))..-.....)))))))))))....... ( -32.50) >DroEre_CAF1 9957 90 - 1 GACUUCUGU------------CCGUCCAGCUGUCUGU-UUGGCCUUUCGGUAAUUGCCAAUGCUGGGGGCAGUUGCCGUU-UGUUUGCCAAACGGCCAAGAUAU (((..(((.------------.....)))..)))..(-((((((....((((((((((.........))))))))))(((-((.....)))))))))))).... ( -35.30) >DroAna_CAF1 9716 103 - 1 GACUUCUGUCUGCCUAAAUCUCCGUCUAUCUGUCUGU-UUGGCCUUUCGGUAAUUGCCAAUGCUGGCGGCAGUUGCCGUUUUGUUUGCAAAAUGGCUAAGAUAU ....(((..(((((..(((..(((.......(((...-..)))....)))..)))((((....)))))))))..(((((((((....)))))))))..)))... ( -31.20) >consensus GACUUCUGU____________CCGUCCGGCUGUCUGU_UUGGCCUUUCGGUAAUUGCCAAUGCUGGGGGCAGUUGCCGUU_UGUUUGCCAAAUGGCCAAGAUAU ..............................(((((...(((((....(((((((((((.........)))))))))))........))))).......))))). (-19.25 = -20.17 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:19 2006