| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,400,966 – 24,401,060 |
| Length | 94 |
| Max. P | 0.954277 |
| Location | 24,400,966 – 24,401,060 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 78.25 |
| Mean single sequence MFE | -14.81 |
| Consensus MFE | -10.93 |
| Energy contribution | -11.30 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.954277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24400966 94 - 27905053 UUUCAAUUUCGAAAAUGGUAUUUGUCAAGUGGGCGCCGC-ACCCACUGCUUCCCCC--ACCCCCCUCAGCGCUCACAAUCCACCCACUAUGCCACCC- ((((......)))).((((((.((....((((((((.((-(.....))).......--..........))))))))........))..))))))...- ( -16.57) >DroSec_CAF1 222992 91 - 1 UUUCAAUUUCGAAAAUGGUAUUUGUCAAGUGGGUGCCCCAACCCAAUGCUUCCCCCCAACCCCC-U-----UUCCCAGUCCACAUACUAUGCCACCC- ((((......)))).((((((........(((((......)))))...................-.-----.....(((......)))))))))...- ( -12.90) >DroSim_CAF1 231697 89 - 1 UUUCAAUUUCGAAAAUGGUAUUUGUCAAGUGGGUGCCCCAACCCAUCGCUUCCCCC--AUCCCC-U-----CUCCCAGUCCACCCACUAUGCCACCC- ((((......)))).((((((......((((((((..(..................--......-.-----......)..))))))))))))))...- ( -16.08) >DroYak_CAF1 231578 74 - 1 UUUCAAUUUCGAAAAUGGUAUUUGUCAAGUGGGCGCCACACCCC-CUG-----------------------CACCCAAUCCACCCACUAUACCACCCC ((((......)))).((((((.((.....((((.((........-..)-----------------------).)))).......))..)))))).... ( -13.70) >consensus UUUCAAUUUCGAAAAUGGUAUUUGUCAAGUGGGCGCCCCAACCCACUGCUUCCCCC__ACCCCC_U_____CUCCCAAUCCACCCACUAUGCCACCC_ ((((......)))).((((((......((((((((.............................................)))))))))))))).... (-10.93 = -11.30 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:41 2006