| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,398,765 – 24,398,855 |
| Length | 90 |
| Max. P | 0.523917 |
| Location | 24,398,765 – 24,398,855 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 84.91 |
| Mean single sequence MFE | -37.52 |
| Consensus MFE | -27.70 |
| Energy contribution | -28.46 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24398765 90 - 27905053 GGGCUCUUGCUCGAAGGUCCUGGCUA-------CACAGGGCUAGGCGCACCGAGUCCUGGCGACAGGGCGCAGGAGCGAUAGAGACAGAGUGCAUUG (.(((((..(((...(((((((....-------..)))))))...(((.((..((((((....))))))...)).)))...)))..))))).).... ( -42.70) >DroSec_CAF1 220783 90 - 1 GGGUUCUUGCUCGAAGGUCCUGGCUA-------CACUGGGCUCGGCGCACCGAGUCCUGGCGACAGAGCGCAGGAGCGAUAGAGACAGAGUGCAUUG ..((.(((.(((...(.((((((((.-------....((((((((....))))))))((....)).))).))))).)....)))...))).)).... ( -36.20) >DroSim_CAF1 229461 97 - 1 GGGUUCUUGCUCGAAGGUCCUGGCUGACUGACUGACUGGGCUCGGCGCACCGAGUCCUGGCGACAGGGCGCAGGAGCGAUAGAGACAGAGUGCAUUG ..((.(((.(((...(.((((((((..(((..((...((((((((....))))))))...)).)))))).))))).)....)))...))).)).... ( -37.30) >DroEre_CAF1 235334 90 - 1 GGGUGCCUGCUCGAAGGUCCUGGCUA-------CACUGCGCGCGGCGUACCGAGUCCUGGCGACAGGACGCAGGAGCGAUAGAGACAGAGUGCAUUG ..(..(((((((...(.((((((.((-------(.(((....))).))).)..((((((....)))))).))))).)....))).))).)..).... ( -38.80) >DroYak_CAF1 229254 75 - 1 GGGCUCCUGCUCGAAGGUCCUG----------------------GCGUAGCGAGUCCUGGCGACAGGGCGCAGGAGCGAUAGAGACAGAGUGCAUUG (.((((.(((((...(.(((((----------------------((...))..((((((....)))))).))))).)....))).)))))).).... ( -32.60) >consensus GGGUUCUUGCUCGAAGGUCCUGGCUA_______CACUGGGCUCGGCGCACCGAGUCCUGGCGACAGGGCGCAGGAGCGAUAGAGACAGAGUGCAUUG ..((.(((((((...(.(((((...................((((....))))((((((....)))))).))))).)....))).))).).)).... (-27.70 = -28.46 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:37 2006