Locus 9141

Sequence ID 3R_DroMel_CAF1
Location 24,390,730 – 24,390,825
Length 95
Max. P 0.990697
window14626

overview

Window 6

Location 24,390,730 – 24,390,825
Length 95
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 81.85
Mean single sequence MFE -23.65
Consensus MFE -23.28
Energy contribution -23.20
Covariance contribution -0.08
Combinations/Pair 1.13
Mean z-score -2.60
Structure conservation index 0.98
SVM decision value 2.23
SVM RNA-class probability 0.990697
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24390730 95 - 27905053
UUGUUUUGCCGCUCUUGAUAAUGAUGCUGGCCAGCAUAUUCAUAAUGAAAUUUCAUUGCGGCAGGACCUACCAC---CACCCC-CCAACCCGCUCUCC------------------C
..((((((((((...(((.....(((((....)))))..))).(((((....))))))))))))))).......---......-..............------------------. ( -24.00)
>DroSec_CAF1 212897 95 - 1
UUGUUUUGCCGCUCUUGAUAAUGAUGCUGGCCAGCAUAUUCAUAAUGAAAUUUCAUUGCGGCAGGACCUCCCAC---CACCCC-CCACCCCGCCCUCC------------------U
..((((((((((...(((.....(((((....)))))..))).(((((....))))))))))))))).......---......-..............------------------. ( -24.00)
>DroSim_CAF1 221541 95 - 1
UUGUUUUGCCGCUCUUGAUAAUGAUGCUGGCCAGCAUAUUCAUAAUGAAAUUUCAUUGCGGCAGGACCUCCCAA---CACCCG-CCACCCCGCCCUCC------------------U
..((((((((((...(((.....(((((....)))))..))).(((((....))))))))))))))).......---......-..............------------------. ( -24.00)
>DroEre_CAF1 227393 91 - 1
UUGUUUUGCCGCUCUUGAUAAUGAUGCUGGCCAGCAUAUUCAUAAUGAAAUUUCAUUGCGGCAGGACCACCC-------CACC-CCCUCUCUCUCGCC------------------C
..((((((((((...(((.....(((((....)))))..))).(((((....))))))))))))))).....-------....-..............------------------. ( -24.00)
>DroYak_CAF1 221157 98 - 1
UUGUUUUGCCGCUCUUGAUAAUGAUGCUGGCCAGCAUAUUCAUAAUGAAAUUUCAUUGCGGCAGGACCUCCCACG-CCACACCCCGCUCCCCCUCUUC------------------U
..((((((((((...(((.....(((((....)))))..))).(((((....))))))))))))))).......(-(........))...........------------------. ( -24.20)
>DroAna_CAF1 215924 116 - 1
UUGUUUUGCCGCUCUUGAUAAUGAUGCUGGCCGGCAUAUUCAUAAUGAAAUUUCGUUGCGGCAAGCACACCCACAUCCACACC-CAUAUCCACACCCCCAGAUACCCCAAAACCCAU
.(((((((((((...(((.....(((((....)))))..))).(((((....))))))))))))).)))..............-................................. ( -21.70)
>consensus
UUGUUUUGCCGCUCUUGAUAAUGAUGCUGGCCAGCAUAUUCAUAAUGAAAUUUCAUUGCGGCAGGACCUCCCAC___CACACC_CCAACCCGCUCUCC__________________U
..((((((((((...(((.....(((((....)))))..))).(((((....))))))))))))))).................................................. (-23.28 = -23.20 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:30 2006