Locus 9139

Sequence ID 3R_DroMel_CAF1
Location 24,388,699 – 24,388,806
Length 107
Max. P 0.999959
window14622

overview

Window 2

Location 24,388,699 – 24,388,806
Length 107
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 70.26
Mean single sequence MFE -29.57
Consensus MFE -17.87
Energy contribution -18.43
Covariance contribution 0.56
Combinations/Pair 1.21
Mean z-score -2.73
Structure conservation index 0.60
SVM decision value 4.89
SVM RNA-class probability 0.999959
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24388699 107 - 27905053
GGUGGAUAGAGUAUUUUCUGUCUCUAUAAACGAUGUUAGUGGAGAACAGGGGAAUGCUCUAUUGUAUAUGAACU----AUAACUAUAGGUAACUGGAAUAUGGUAUAGGUA------
....(((((((((((..((.(((((((.(((...))).)))))))...))..))))))))))).........((----(((.(((((..(.....)..))))))))))...------ ( -33.40)
>DroSim_CAF1 219554 106 - 1
GGUGGAUAGAGUAUUUUCUGUUUUUAUAAACAGUGUUCGUGGAUAACAGGGGAAUGCUCUAUUGUAUAUGAA-U----AUAAAUGUAAGUA---GGCAUAUGGUCUAGGUA-ACC--
(((.(((((((((((..(((((((((..(((...)))..)))).)))))..).)))))))))).((((((..-(----((........)))---..)))))).........-)))-- ( -27.80)
>DroEre_CAF1 225378 113 - 1
GGUGGAUAGAGUACUUUCUGUCUUUGUAAAUGGUAUUCACGCAGUGCAGGGGUAUGCUGAACUGUAUACGAG-UAUACAUAAAUAGAGGUAACUCAGAU--UGGCUAUGA-ACCCAU
(((..((((....(..(((((((((((..(((((((((..(((((.(((.......))).)))))....)))-))).)))..))))))).....)))).--.).))))..-)))... ( -27.50)
>consensus
GGUGGAUAGAGUAUUUUCUGUCUUUAUAAACGGUGUUCGUGGAGAACAGGGGAAUGCUCUAUUGUAUAUGAA_U____AUAAAUAUAGGUAACUGGAAUAUGGUCUAGGUA__CC__
....(((((((((((..((((((((((.(((...))).)))))).))))..).))))))))))...................................................... (-17.87 = -18.43 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:26 2006