Locus 9136

Sequence ID 3R_DroMel_CAF1
Location 24,382,547 – 24,382,648
Length 101
Max. P 0.771037
window14616

overview

Window 6

Location 24,382,547 – 24,382,648
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.56
Mean single sequence MFE -21.91
Consensus MFE -19.30
Energy contribution -19.14
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.62
Structure conservation index 0.88
SVM decision value 0.53
SVM RNA-class probability 0.771037
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24382547 101 + 27905053
-----------------AGAACCAGGUAGCAUUCUGCCAACCUGUCAGCCCUAAUGUAACA--UAACAUAACAACGGAGCAAAUGGGCAUGACAUUGCCAUGAUCCGAUCCACACAAAAC
-----------------.((..(((((.((.....))..))))))).......((((....--..)))).....((((.((....((((......)))).)).))))............. ( -20.70)
>DroSec_CAF1 204799 96 + 1
-----------------AGAACCAGGUAGCAUUCUGCCAACCUGUCAGCCCUAAUGUAACA--UAACAUAACAACGGAGCAAAUGGGCAUGACAUUGCCAUGAU-----CGACACAAAAC
-----------------.((....(((((....)))))....(((((((((...(((..(.--............)..)))...)))).))))).........)-----).......... ( -20.52)
>DroSim_CAF1 213428 96 + 1
-----------------AGAACCAGGUAGCAUUCUGCCAACCUGUCAGCCCUAAUGUAACA--UAACAUAACAACGGAGCAAAUGGGCAUGACAUUGCCAUGAU-----CCACACAAAAC
-----------------.......(((((....)))))....(((((((((...(((..(.--............)..)))...)))).)))))..........-----........... ( -20.22)
>DroEre_CAF1 218960 113 + 1
GUACCAGUACCAGUACCAGUGCCAGGUAGCAUUCUGCCAACCUGUCAGCCCUAAUGCAACA--UAACAUAACAAGGCAGCAAAUGGGCAUGACAUUGCCAUGAU-----CCACACAAAAC
((((..(((....)))..))))..(((((....)))))....(((((((((...(((....--...............)))...)))).)))))..........-----........... ( -25.61)
>DroYak_CAF1 212543 106 + 1
---------UCAGUAUCAGUACCAGGUAGCAUUAUGCCAACCUGUCAGCCCUAAUGUAACACACAGCAUAACAAGGCAGCAAAUGGGCAUGACAUUGCCAUGAU-----CCACACAAAAC
---------...(.((((......(((((..(((((((....(((..(((...((((........)))).....))).)))....)))))))..))))).))))-----.)......... ( -22.50)
>consensus
_________________AGAACCAGGUAGCAUUCUGCCAACCUGUCAGCCCUAAUGUAACA__UAACAUAACAACGGAGCAAAUGGGCAUGACAUUGCCAUGAU_____CCACACAAAAC
........................((((((.....)).....(((((((((...(((..(...............)..)))...)))).))))).))))..................... (-19.30 = -19.14 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:21 2006