| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,381,182 – 24,381,275 |
| Length | 93 |
| Max. P | 0.611701 |
| Location | 24,381,182 – 24,381,275 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.99 |
| Mean single sequence MFE | -27.05 |
| Consensus MFE | -14.48 |
| Energy contribution | -14.62 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24381182 93 - 27905053 GUAAUUAGAGUUGAAUGCGAGAGUCAAAAAGUCGUGUAAUGCGAUUUGUAUGGCCCAGCGGGAGAU--CCCAGCAGGAUGCCAGU-----------------------C--UAUUGCAUC ..............((((((.((.(...(((((((.....)))))))...((((((.(((((....--))).)).))..))))).-----------------------)--).)))))). ( -27.30) >DroVir_CAF1 191799 94 - 1 GUAAUUAGAGUUGAAUGGCUGAGUCGAAAAGUCGUGUAAUGCGAUUUGUAUGGCACAGCGGGACAUAGCUCGACAGGAGGUCA-U-----------------------G--UAUUACAUA (((((..((((((..(.((((.((((..(((((((.....)))))))...)))).)))).)....))))))(((.....))).-.-----------------------.--.)))))... ( -28.30) >DroGri_CAF1 188635 93 - 1 GUAAUUAGAGUUGAAUGCCUAAGUCGAAAAGUCGUGUAAUGCGAUUUGUAUGGCACAGCGGGAGAUU-CCCGACAGGAGGUCA-U-----------------------G--UAUUACAUA (((((......(((...(((..((((..(((((((.....)))))))...))))...(((((.....-)))).))))...)))-.-----------------------.--.)))))... ( -25.60) >DroWil_CAF1 181311 114 - 1 GUAAUUAGAGUUGAAUGCGUUAGUCAAAAAGUCGUGUAAUGCGAUUUGUAUGGCCCAGCAGGAGAU--CCCAACAGGAUGGCAAAAAAAAAAAAAAGGAGAAGAAAAAC--UG--UCAUA .........((((..(((....((((..(((((((.....)))))))...))))...)))((....--))))))...((((((..........................--))--)))). ( -20.87) >DroMoj_CAF1 167698 95 - 1 GUAAUUAGAGUUGAAUGCCUGAGUCGAAAAGUCGUGUAAUGCGAUUUGUAUGGCACAGCGGGAGAUA-CCCGACAGGAGGUCA-U-----------------------AUCUAUUGCAUA (((((.(((..(((...((((.((((..(((((((.....)))))))...))))....((((.....-)))).))))...)))-.-----------------------.))))))))... ( -31.30) >DroAna_CAF1 206299 93 - 1 GUAAUUAGAGUUGAAUGCGAGAGUCAAAAAGUCGUGUAAUGCGAUUUGUAUGGCCCAGCGGGAGAU--CCCUGCAGGAUGUCAGG-----------------------C--UAUUGCAUC ..............((((((.((((...(((((((.....)))))))...((((((.(((((....--.))))).))..))))))-----------------------)--).)))))). ( -28.90) >consensus GUAAUUAGAGUUGAAUGCCUGAGUCAAAAAGUCGUGUAAUGCGAUUUGUAUGGCACAGCGGGAGAU__CCCGACAGGAGGUCA_U_______________________C__UAUUGCAUA (((((...........((....((((..(((((((.....)))))))...))))...))(((......))).........................................)))))... (-14.48 = -14.62 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:20 2006