Locus 9134

Sequence ID 3R_DroMel_CAF1
Location 24,380,055 – 24,380,147
Length 92
Max. P 0.799967
window14614

overview

Window 4

Location 24,380,055 – 24,380,147
Length 92
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 93.71
Mean single sequence MFE -27.82
Consensus MFE -23.14
Energy contribution -22.87
Covariance contribution -0.28
Combinations/Pair 1.05
Mean z-score -2.14
Structure conservation index 0.83
SVM decision value 0.61
SVM RNA-class probability 0.799967
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24380055 92 + 27905053
CCCUCGGUCCUU--CGCUGCUCGGCAAAAAGAUGCAAAGACAGCUAAGCAAACAUCAUCAGCACAAAGAUGGCAGCG------ACAGGACGCAGCAGCAG
......((((((--((((((((.(((......)))...))...............((((........))))))))))------).)))))((....)).. ( -27.80)
>DroSec_CAF1 202300 90 + 1
UCCUCGGUCCUU--CGCUGCUCGGCAAAAAGAUGCAAAGACAGCUAAGCAAACAUCAUCAGCACAAAGAUGGCAGCG------ACAGGACGCAGCAGC--
......((((((--((((((((.(((......)))...))...............((((........))))))))))------).)))))........-- ( -26.50)
>DroSim_CAF1 210954 90 + 1
UCCUCGGUCCUU--CGCUGCUCGGCAAAAAGAUGCAAAGACAGCUAAGCAAACAUCAUCAGCACAAAGAUGGCAGCG------ACAGGACGCAGCAGC--
......((((((--((((((((.(((......)))...))...............((((........))))))))))------).)))))........-- ( -26.50)
>DroEre_CAF1 216349 92 + 1
UCCUCGGUCCUU--CGCUGCUCGGCAAAAAGAUGCAAAGACAGCUAAGCAAACAUCAUCAGCACAAAGAUGGCAGCG------ACAGGACGCAGCAGCAG
......((((((--((((((((.(((......)))...))...............((((........))))))))))------).)))))((....)).. ( -27.80)
>DroYak_CAF1 209973 94 + 1
UCCUCGGUCCUUCUCGCUGCUCGGCAAAAAGAUGCAAAGACAGCUAAGCAAACAUCAUCAGCACAAAGAUGGCAGCG------ACAGGACGCAGCAGCAG
......(((((..(((((((((.(((......)))...))...............((((........))))))))))------).)))))((....)).. ( -27.30)
>DroAna_CAF1 205344 96 + 1
-GCUGGGUCCUU--CGCUGCUCGGCAAAAAGAUGCAAAGACAGCUAAGCAAACAUCAUCAGCACAAAGAUGGCAGCGACGGCGACAGGACGAAGCAUCG-
-(((..((((((--(((((.(((((.......(((..((....))..))).....((((........))))))..))))))))).)))))..)))....- ( -31.00)
>consensus
UCCUCGGUCCUU__CGCUGCUCGGCAAAAAGAUGCAAAGACAGCUAAGCAAACAUCAUCAGCACAAAGAUGGCAGCG______ACAGGACGCAGCAGCA_
......(((((....((((((..(((......)))..)).))))...((...((((...........))))...)).........)))))((....)).. (-23.14 = -22.87 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:20 2006