| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,377,422 – 24,377,514 |
| Length | 92 |
| Max. P | 0.927477 |
| Location | 24,377,422 – 24,377,514 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 75.64 |
| Mean single sequence MFE | -34.20 |
| Consensus MFE | -21.43 |
| Energy contribution | -22.43 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.927477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24377422 92 - 27905053 AAGGACGUGGCAUGGAGCACCGACAGGACGAAGG------------GAAGCAGUGGGCGGUGGACGG------GGAGCUGGAGCCAAAUGCUGAGCGCCAGCCAUGAUGA .....((((((.(((.((.((....)).......------------..((((...(((......(((------....)))..)))...))))..)).))))))))).... ( -32.20) >DroSim_CAF1 208344 92 - 1 AAGGACGUGGCAUGGAGCACCGACAGGACGAAGG------------GAAGCAGCGGGCGGUGGCCGG------GUAGCUGGAGCCAAAUGCUGAGCGCCAGCCAUGAUGA .....((((((.(((.((.((....)).......------------....(((((...(((..((((------....)))).)))...))))).)).))))))))).... ( -35.10) >DroAna_CAF1 202483 105 - 1 AAGGACGUGGCAUGGAGAAACGGCAGGACGAACGGGGUACUGUCGGGGGCCAACGGG-----AUCGGGGAGGAUAAACUGGAGCCAAAUGCUGAGCGCCAGCCAUGAUGA .....((((((.(((.(...(((((...(((.(((....))))))..(((...(((.-----(((......)))...)))..)))...)))))..).))))))))).... ( -35.30) >consensus AAGGACGUGGCAUGGAGCACCGACAGGACGAAGG____________GAAGCAGCGGGCGGUGGACGG______GAAGCUGGAGCCAAAUGCUGAGCGCCAGCCAUGAUGA .....((((((.(((.((..((......))..................((((...(((.....((((..........)))).)))...))))..)).))))))))).... (-21.43 = -22.43 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:18 2006