Locus 913

Sequence ID 3R_DroMel_CAF1
Location 3,076,035 – 3,076,155
Length 120
Max. P 0.956011
window1446

overview

Window 6

Location 3,076,035 – 3,076,155
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.33
Mean single sequence MFE -41.50
Consensus MFE -23.52
Energy contribution -23.25
Covariance contribution -0.27
Combinations/Pair 1.50
Mean z-score -2.50
Structure conservation index 0.57
SVM decision value 1.46
SVM RNA-class probability 0.956011
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3076035 120 + 27905053
UACACUGGUGCUCAUCGAUGGUACCUGGCCUCAGGCUAAAGCCAUUUACGCUAGCAGUCCGGCUCUACACCGCCUGCGACAGGUGAAACUCAUCGCCGUGGGUAUAAGUGACUACAUCAU
..((((.((((((((((((((((((((......(((....)))..........((((..(((.......))).))))..))))))....))))))..)))))))).)))).......... ( -41.00)
>DroVir_CAF1 1997 120 + 1
UACUCUCGUGCUCAUUGACGGCACUUGGCCACAAGCGAAGGCUAUCUAUGCCAGCAGUCCGGCACUGCAUCGCUUGCGCCAAAUCAAACUAAUUGCGGUGGGCAUUAGCGAUUACAUUAU
..(.((.((((((((((.......(((((..(((((((.(((.......))).(((((.....))))).))))))).)))))..(((.....))))))))))))).)).).......... ( -40.90)
>DroGri_CAF1 2236 120 + 1
UACGCUGGUGCUCAUUGACGGUACUUGGCCGCAGGCAAAGGCCAUCUAUGCCAGCAGUCCGGCACUGCACCGCCUGCGUCAGGUAAAGCUCAUUGCGGUGGGCAUUAGCGAUUAUAUUAU
..((((((((((((((.....((((((((.((((((...(((.......))).(((((.....)))))...))))))))))))))..((.....)))))))))))))))).......... ( -55.90)
>DroWil_CAF1 9680 120 + 1
UACCUUAAUCCUAAUAGAUGGCACCUGGCCCCAGGCUAAGGCCAUCUAUGCCAGCAGUCCUGUUCUGCAUCGUCUCAAGCAGGUCAAGCUCAUUGCUGUUGGCAUCAGUGACUAUAUCAU
........((((.(((((((((.(.(((((...))))).))))))))))((((((.(.((((((.((........)))))))).).(((.....)))))))))...)).))......... ( -40.40)
>DroMoj_CAF1 2009 120 + 1
UACCCUGGUGCUCAUUGACGGCACCUGGCCCCAAGCAAAGGCCAUCUAUGCUAGUAGUCCGGCACUGCAUCAACUGCGACAAGUCAAACUAAUUGCGGUGGGUGUGAGUGACUACAUUAU
......((((((.......))))))(((((.........))))).........((((((....((((((((.(((((((..((.....))..))))))).))))).)))))))))..... ( -39.00)
>DroAna_CAF1 2048 120 + 1
CACGCUGCUACUUAUAGACGGCACUUGGCCGCAGGCCAAAGCCAUUUACGCCAGCAGUCCUGCUUUACAUCGCCUCCGUCAAGUUAAACUUAUUGCUGUGGGCAUAAGUGACUAUAUCAU
(((((((((.....((((.(((..((((((...)))))).))).))))....)))))).............(((..((.(((..........))).))..)))....))).......... ( -31.80)
>consensus
UACCCUGGUGCUCAUUGACGGCACCUGGCCCCAGGCAAAGGCCAUCUAUGCCAGCAGUCCGGCACUGCAUCGCCUGCGACAAGUCAAACUCAUUGCGGUGGGCAUAAGUGACUACAUCAU
..(.((.((((((((((..(((.....))).(((((...(((.......))).((((.......))))...)))))...................)))))))))).)).).......... (-23.52 = -23.25 +  -0.27) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:14 2006