Locus 9128

Sequence ID 3R_DroMel_CAF1
Location 24,370,467 – 24,370,572
Length 105
Max. P 0.749857
window14602

overview

Window 2

Location 24,370,467 – 24,370,572
Length 105
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 79.80
Mean single sequence MFE -32.45
Consensus MFE -20.38
Energy contribution -21.75
Covariance contribution 1.38
Combinations/Pair 1.19
Mean z-score -1.91
Structure conservation index 0.63
SVM decision value 0.47
SVM RNA-class probability 0.749857
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24370467 105 - 27905053
GCGAACA---CGAUGGUUAGCGGCGCUGUAAAACAGCUGAUUUGAUU-UCCGUCCCUGGUAUCAGUCAGCUGCUGCGUUACGCGACAUCUAAAACAUAAACUA--------UAAGAA
.......---.((((....(((((((.......(((((((((.(((.-.(((....))).))))))))))))..))))..)))..))))..............--------...... ( -28.30)
>DroSim_CAF1 200784 114 - 1
GCUAACA---GGAUGAAUCGCAGCGCUGAAAAACAGCUGAUUGGAUUGUCAGUCCCUGGUAUCAGUCAGCUGCUGCGUUACGCGACAUCUAAAACAUAAGCGAGAUUCAAUUAAAAA
.......---...((((((((((((((((......((((((......))))))..(((....)))))))).)))))....(((................))).))))))........ ( -33.39)
>DroEre_CAF1 204718 117 - 1
GUCACUAUUAGGGUGCAUGGCAGCGCUGUGAAGCAGCUGAUUGGAAUUGCAGUCCCUGGCACAAAUCAGCUGCUGCGUUACGCGACAUCUAAAACAUAAGUUAGAUUCAAUUAAAAA
(((....(((.(((((......))))).)))(((((((((((.....(((........)))..)))))))))))(((...))))))((((((........))))))........... ( -35.80)
>DroYak_CAF1 198864 114 - 1
GCCACCA---CGGUGCAUGGCAACGCUGUGAAACAGCUGAUUGGAAUUGCACUCCCUGGCAUCAAUCAGCUGCUGCGUUACGCGACAGCUAAAACAUAAGUUAGAUUCAAUUAAAAG
.....((---(((((........))))))).(((((((((((((...(((.(.....))))))))))))))((((((.....)).))))..........)))............... ( -32.30)
>consensus
GCCAACA___CGAUGCAUGGCAGCGCUGUAAAACAGCUGAUUGGAAUUGCAGUCCCUGGCAUCAAUCAGCUGCUGCGUUACGCGACAUCUAAAACAUAAGCUAGAUUCAAUUAAAAA
...........((((...((((((((((.....))))(((((((...(((........))))))))))))))))(((...)))..))))............................ (-20.38 = -21.75 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:09 2006